RNA–Protein interactions for RNA: ENST00000639659.1

SYNE2-228, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,290 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-228ENST00000639659 GGA3Q9NZ52 723 aa19.52■□□□□ 0.72
SYNE2-228ENST00000639659 RTL9Q8NET4 1388 aa19.52■□□□□ 0.72
SYNE2-228ENST00000639659 UFL1O94874 794 aa19.51■□□□□ 0.71
SYNE2-228ENST00000639659 RPS12P25398 132 aaKnown RBP19.51■□□□□ 0.71
SYNE2-228ENST00000639659 ZNF157P51786 506 aaPredicted RBP19.51■□□□□ 0.71
SYNE2-228ENST00000639659 SF3B3Q15393 1217 aaKnown RBP19.51■□□□□ 0.71
SYNE2-228ENST00000639659 TBC1D16Q8TBP0 767 aa19.51■□□□□ 0.71
SYNE2-228ENST00000639659 CCDC85AQ96PX6 553 aaPredicted RBP19.51■□□□□ 0.71
SYNE2-228ENST00000639659 ANKIB1Q9P2G1 1089 aa19.51■□□□□ 0.71
SYNE2-228ENST00000639659 KIF23Q02241 960 aaPredicted RBP19.5■□□□□ 0.71
SYNE2-228ENST00000639659 RIC3Q7Z5B4 369 aa19.5■□□□□ 0.71
SYNE2-228ENST00000639659 SULF1Q8IWU6 871 aa19.5■□□□□ 0.71
SYNE2-228ENST00000639659 RUNDC1Q96C34 613 aa19.5■□□□□ 0.71
SYNE2-228ENST00000639659 ZC3H12CQ9C0D7 883 aaKnown RBP19.5■□□□□ 0.71
SYNE2-228ENST00000639659 TRIM35Q9UPQ4 493 aa19.5■□□□□ 0.71
SYNE2-228ENST00000639659 ASTN2O75129 1339 aaPredicted RBP19.5■□□□□ 0.71
SYNE2-228ENST00000639659 SLC34A2O95436 690 aa19.49■□□□□ 0.71
SYNE2-228ENST00000639659 RPS8P62241 208 aaKnown RBP19.49■□□□□ 0.71
SYNE2-228ENST00000639659 GOLGA2Q08379 1002 aa19.49■□□□□ 0.71
SYNE2-228ENST00000639659 DUSP27Q5VZP5 1158 aa19.49■□□□□ 0.71
SYNE2-228ENST00000639659 SEC31BQ9NQW1 1179 aa19.49■□□□□ 0.71
SYNE2-228ENST00000639659 HYPKQ9NX55 129 aa19.49■□□□□ 0.71
SYNE2-228ENST00000639659 SCN9AQ15858 1988 aa19.48■□□□□ 0.71
SYNE2-228ENST00000639659 RGS19P49795 217 aa19.48■□□□□ 0.71
SYNE2-228ENST00000639659 JARID2Q92833 1246 aaPredicted RBP19.48■□□□□ 0.71
SYNE2-228ENST00000639659 CCDC102AQ96A19 550 aa19.48■□□□□ 0.71
SYNE2-228ENST00000639659 MYBBP1AQ9BQG0 1328 aaKnown RBP19.48■□□□□ 0.71
SYNE2-228ENST00000639659 FAM155AB1AL88 458 aaPredicted RBP19.47■□□□□ 0.71
SYNE2-228ENST00000639659 TRPA1O75762 1119 aa19.47■□□□□ 0.71
SYNE2-228ENST00000639659 HOXB7P09629 217 aa19.47■□□□□ 0.71
SYNE2-228ENST00000639659 MYD88Q99836 296 aa19.47■□□□□ 0.71
SYNE2-228ENST00000639659 GGA1Q9UJY5 639 aa19.47■□□□□ 0.71
SYNE2-228ENST00000639659 ELL2O00472 640 aaPredicted RBP19.46■□□□□ 0.71
SYNE2-228ENST00000639659 CDCA5Q96FF9 252 aa19.46■□□□□ 0.71
SYNE2-228ENST00000639659 MBIPQ9NS73 344 aa19.46■□□□□ 0.71
SYNE2-228ENST00000639659 AKAP11Q9UKA4 1901 aa19.45■□□□□ 0.7
SYNE2-228ENST00000639659 SOX10P56693 466 aa19.45■□□□□ 0.7
SYNE2-228ENST00000639659 ANGEL2Q5VTE6 544 aaKnown RBP19.45■□□□□ 0.7
SYNE2-228ENST00000639659 PHAXQ9H814 394 aaKnown RBP19.45■□□□□ 0.7
SYNE2-228ENST00000639659 VIL1P09327 827 aaKnown RBP19.44■□□□□ 0.7
SYNE2-228ENST00000639659 DDX10Q13206 875 aaKnown RBP19.44■□□□□ 0.7
SYNE2-228ENST00000639659 ZBTB38Q8NAP3 1195 aaPredicted RBP19.44■□□□□ 0.7
SYNE2-228ENST00000639659 RNF186Q9NXI6 227 aa19.44■□□□□ 0.7
SYNE2-228ENST00000639659 SCAF8Q9UPN6 1271 aaKnown RBP19.44■□□□□ 0.7
SYNE2-228ENST00000639659 SLC10A3P09131 477 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 SCARF1Q14162 830 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 CCDC152Q4G0S7 254 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 FBXW7Q969H0 707 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 SAGE1Q9NXZ1 904 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 ADAMTS8Q9UP79 889 aa19.43■□□□□ 0.7
SYNE2-228ENST00000639659 HSP90B1P14625 803 aaKnown RBP19.42■□□□□ 0.7
SYNE2-228ENST00000639659 RSBN1LQ6PCB5 846 aaPredicted RBP19.42■□□□□ 0.7
SYNE2-228ENST00000639659 PODXL2Q9NZ53 605 aa19.42■□□□□ 0.7
SYNE2-228ENST00000639659 TRIM28Q13263 835 aaKnown RBP19.41■□□□□ 0.7
SYNE2-228ENST00000639659 ANKRD18AQ8IVF6 992 aa19.41■□□□□ 0.7
SYNE2-228ENST00000639659 SPEF2Q9C093 1822 aa19.41■□□□□ 0.7
SYNE2-228ENST00000639659 PDE8AO60658 829 aa19.4■□□□□ 0.7
SYNE2-228ENST00000639659 TTLL12Q14166 644 aaPredicted RBP19.4■□□□□ 0.7
SYNE2-228ENST00000639659 RASAL3Q86YV0 1011 aa19.4■□□□□ 0.7
SYNE2-228ENST00000639659 CSRNP1Q96S65 589 aa19.4■□□□□ 0.7
SYNE2-228ENST00000639659 CWC25Q9NXE8 425 aaPredicted RBP19.4■□□□□ 0.7
SYNE2-228ENST00000639659 PCCAP05165 728 aaPredicted RBP19.39■□□□□ 0.69
SYNE2-228ENST00000639659 MOB2Q70IA6 237 aa19.39■□□□□ 0.69
SYNE2-228ENST00000639659 AGBL3Q8NEM8 1001 aa19.39■□□□□ 0.69
SYNE2-228ENST00000639659 MYOZ2Q9NPC6 264 aa19.39■□□□□ 0.69
SYNE2-228ENST00000639659 XDHP47989 1333 aa19.39■□□□□ 0.69
SYNE2-228ENST00000639659 USP17L8P0C7I0 530 aa19.38■□□□□ 0.69
SYNE2-228ENST00000639659 ZNF280AP59817 542 aaPredicted RBP19.38■□□□□ 0.69
SYNE2-228ENST00000639659 PSME4Q14997 1843 aa19.38■□□□□ 0.69
SYNE2-228ENST00000639659 PRAMEF18Q5VWM3 479 aa19.38■□□□□ 0.69
SYNE2-228ENST00000639659 CCDC191Q8NCU4 936 aa19.38■□□□□ 0.69
SYNE2-228ENST00000639659 PAPPA2Q9BXP8 1791 aa19.38■□□□□ 0.69
SYNE2-228ENST00000639659 TNRC18O15417 2968 aaPredicted RBP19.38■□□□□ 0.69
SYNE2-228ENST00000639659 USP17L3A6NCW0 530 aa19.37■□□□□ 0.69
SYNE2-228ENST00000639659 USP17L4A6NCW7 530 aa19.37■□□□□ 0.69
SYNE2-228ENST00000639659 MKRN3Q13064 507 aaKnown RBP19.37■□□□□ 0.69
SYNE2-228ENST00000639659 USP17L1Q7RTZ2 530 aa19.37■□□□□ 0.69
SYNE2-228ENST00000639659 UBE2Q2LH0YL09 131 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 APAF1O14727 1248 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 DDX58O95786 925 aaKnown RBP19.36■□□□□ 0.69
SYNE2-228ENST00000639659 ATP2B4P23634 1241 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 GNAI1P63096 354 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 CTU1Q7Z7A3 348 aaKnown RBP19.36■□□□□ 0.69
SYNE2-228ENST00000639659 MXD3Q9BW11 206 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 IFT57Q9NWB7 429 aa19.36■□□□□ 0.69
SYNE2-228ENST00000639659 CTSWP56202 376 aa19.35■□□□□ 0.69
SYNE2-228ENST00000639659 CDC5LQ99459 802 aaKnown RBP19.35■□□□□ 0.69
SYNE2-228ENST00000639659 METTL22Q9BUU2 404 aaPredicted RBP19.35■□□□□ 0.69
SYNE2-228ENST00000639659 ZBTB4Q9P1Z0 1013 aaPredicted RBP19.35■□□□□ 0.69
SYNE2-228ENST00000639659 HDAC9Q9UKV0 1011 aa19.35■□□□□ 0.69
SYNE2-228ENST00000639659 MAP3K2Q9Y2U5 619 aa19.35■□□□□ 0.69
SYNE2-228ENST00000639659 WTIPA6NIX2 430 aaPredicted RBP19.34■□□□□ 0.69
SYNE2-228ENST00000639659 CALD1Q05682 793 aaKnown RBP19.34■□□□□ 0.69
SYNE2-228ENST00000639659 C8orf58Q8NAV2 365 aa19.34■□□□□ 0.69
SYNE2-228ENST00000639659 TBC1D8O95759 1140 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 ZNF853P0CG23 659 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 FKBP1BP68106 108 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 PRKG1Q13976 671 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 NBPF9Q3BBW0 867 aa19.33■□□□□ 0.68
SYNE2-228ENST00000639659 PODNQ7Z5L7 613 aa19.33■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms