RNA–Protein interactions for RNA: ENST00000638016.1

PNKP-230, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 109 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-230ENST00000638016 BEND3Q5T5X7 828 aa22.6■■□□□ 1.21
PNKP-230ENST00000638016 GPRC5DQ9NZD1 345 aa22.6■■□□□ 1.21
PNKP-230ENST00000638016 ANKIB1Q9P2G1 1089 aa22.6■■□□□ 1.21
PNKP-230ENST00000638016 PNMA8AQ86V59 439 aaPredicted RBP22.59■■□□□ 1.21
PNKP-230ENST00000638016 PODXL2Q9NZ53 605 aa22.59■■□□□ 1.21
PNKP-230ENST00000638016 ZBTB12Q9Y330 459 aaPredicted RBP22.59■■□□□ 1.21
PNKP-230ENST00000638016 ECE2O60344 883 aa22.58■■□□□ 1.21
PNKP-230ENST00000638016 SLFN5Q08AF3 891 aa22.58■■□□□ 1.21
PNKP-230ENST00000638016 CNTROBQ8N137 903 aa22.58■■□□□ 1.21
PNKP-230ENST00000638016 PLA2G12BQ9BX93 195 aa22.58■■□□□ 1.21
PNKP-230ENST00000638016 RTL9Q8NET4 1388 aa22.58■■□□□ 1.21
PNKP-230ENST00000638016 PCNTO95613 3336 aa22.58■■□□□ 1.2
PNKP-230ENST00000638016 CCER2I3L3R5 266 aa22.57■■□□□ 1.2
PNKP-230ENST00000638016 PSMD14O00487 310 aa22.57■■□□□ 1.2
PNKP-230ENST00000638016 CDC5LQ99459 802 aaKnown RBP22.57■■□□□ 1.2
PNKP-230ENST00000638016 GGA1Q9UJY5 639 aa22.57■■□□□ 1.2
PNKP-230ENST00000638016 E9PSI1 815 aa22.56■■□□□ 1.2
PNKP-230ENST00000638016 SLC4A10Q6U841 1118 aa22.56■■□□□ 1.2
PNKP-230ENST00000638016 TRPM4Q8TD43 1214 aa22.56■■□□□ 1.2
PNKP-230ENST00000638016 EYA3Q99504 573 aa22.56■■□□□ 1.2
PNKP-230ENST00000638016 BCL2L13Q9BXK5 485 aa22.56■■□□□ 1.2
PNKP-230ENST00000638016 ITGA6P23229 1130 aa22.55■■□□□ 1.2
PNKP-230ENST00000638016 EPHA10Q5JZY3 1008 aa22.55■■□□□ 1.2
PNKP-230ENST00000638016 MRPL50Q8N5N7 158 aaKnown RBP22.55■■□□□ 1.2
PNKP-230ENST00000638016 MINPP1Q9UNW1 487 aa22.55■■□□□ 1.2
PNKP-230ENST00000638016 XDHP47989 1333 aa22.55■■□□□ 1.2
PNKP-230ENST00000638016 CSF1RP07333 972 aa22.54■■□□□ 1.2
PNKP-230ENST00000638016 FOXO4P98177 505 aa22.54■■□□□ 1.2
PNKP-230ENST00000638016 TNIP1Q15025 636 aa22.54■■□□□ 1.2
PNKP-230ENST00000638016 CREBZFQ9NS37 354 aa22.54■■□□□ 1.2
PNKP-230ENST00000638016 ADARB2Q9NS39 739 aaKnown RBP22.54■■□□□ 1.2
PNKP-230ENST00000638016 BSDC1Q9NW68 430 aaPredicted RBP22.54■■□□□ 1.2
PNKP-230ENST00000638016 MKRN1Q9UHC7 482 aaKnown RBP22.54■■□□□ 1.2
PNKP-230ENST00000638016 TRAF5O00463 557 aa22.53■■□□□ 1.2
PNKP-230ENST00000638016 HIRAP54198 1017 aaPredicted RBP22.53■■□□□ 1.2
PNKP-230ENST00000638016 USP50Q70EL3 339 aaPredicted RBP22.53■■□□□ 1.2
PNKP-230ENST00000638016 MICALL2Q8IY33 904 aa22.53■■□□□ 1.2
PNKP-230ENST00000638016 JMYQ8N9B5 988 aa22.53■■□□□ 1.2
PNKP-230ENST00000638016 SSH1Q8WYL5 1049 aa22.53■■□□□ 1.2
PNKP-230ENST00000638016 ZC3H12CQ9C0D7 883 aaKnown RBP22.53■■□□□ 1.2
PNKP-230ENST00000638016 EGFRP00533 1210 aa22.52■■□□□ 1.2
PNKP-230ENST00000638016 CNOT7Q9UIV1 285 aaKnown RBP22.52■■□□□ 1.2
PNKP-230ENST00000638016 GRM8O00222 908 aa22.51■■□□□ 1.19
PNKP-230ENST00000638016 ATP2B4P23634 1241 aa22.51■■□□□ 1.19
PNKP-230ENST00000638016 KLRK1P26718 216 aa22.51■■□□□ 1.19
PNKP-230ENST00000638016 A0A1B0GUL6 1792 aa22.5■■□□□ 1.19
PNKP-230ENST00000638016 PSME4Q14997 1843 aa22.5■■□□□ 1.19
PNKP-230ENST00000638016 IGHMBP2P38935 993 aaKnown RBP22.5■■□□□ 1.19
PNKP-230ENST00000638016 SAMD7Q7Z3H4 446 aa22.5■■□□□ 1.19
PNKP-230ENST00000638016 TXNRD3Q86VQ6 643 aa22.5■■□□□ 1.19
PNKP-230ENST00000638016 CHMP3Q9Y3E7 222 aa22.5■■□□□ 1.19
PNKP-230ENST00000638016 TMEM88BA6NKF7 163 aa22.49■■□□□ 1.19
PNKP-230ENST00000638016 CCT4P50991 539 aaKnown RBP22.49■■□□□ 1.19
PNKP-230ENST00000638016 TRMT2AQ8IZ69 625 aaKnown RBP22.49■■□□□ 1.19
PNKP-230ENST00000638016 SRCIN1Q9C0H9 1055 aa22.49■■□□□ 1.19
PNKP-230ENST00000638016 ZNF646O15015 1829 aaPredicted RBP22.48■■□□□ 1.19
PNKP-230ENST00000638016 G3V3G9 751 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 SNAP23O00161 211 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 TBC1D10BQ4KMP7 808 aaPredicted RBP22.48■■□□□ 1.19
PNKP-230ENST00000638016 DCAF8Q5TAQ9 597 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 LMBR1LQ6UX01 489 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 MIER1Q8N108 512 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 SUCLG2Q96I99 432 aa22.48■■□□□ 1.19
PNKP-230ENST00000638016 ZNF594Q96JF6 807 aaPredicted RBP22.48■■□□□ 1.19
PNKP-230ENST00000638016 GLIS2Q9BZE0 524 aaPredicted RBP22.48■■□□□ 1.19
PNKP-230ENST00000638016 TRPM7Q96QT4 1865 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 ANKRD18BA2A2Z9 1011 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 ALDH1L1O75891 902 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 DLK2Q6UY11 383 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 KAZALD1Q96I82 304 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 MPHOSPH8Q99549 860 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 C9orf78Q9NZ63 289 aaPredicted RBP22.47■■□□□ 1.19
PNKP-230ENST00000638016 CNTNAP1P78357 1384 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 MED23Q9ULK4 1368 aa22.47■■□□□ 1.19
PNKP-230ENST00000638016 H7C1D1 291 aa22.46■■□□□ 1.19
PNKP-230ENST00000638016 VIL1P09327 827 aaKnown RBP22.46■■□□□ 1.19
PNKP-230ENST00000638016 NBPF7P0C2Y1 421 aaPredicted RBP22.46■■□□□ 1.19
PNKP-230ENST00000638016 CHRNDQ07001 517 aa22.46■■□□□ 1.19
PNKP-230ENST00000638016 RBM26Q5T8P6 1007 aaKnown RBP22.46■■□□□ 1.19
PNKP-230ENST00000638016 HELBQ8NG08 1087 aaPredicted RBP22.46■■□□□ 1.19
PNKP-230ENST00000638016 POLR2AP24928 1970 aaKnown RBP22.45■■□□□ 1.18
PNKP-230ENST00000638016 DPF2Q92785 391 aa22.45■■□□□ 1.18
PNKP-230ENST00000638016 MXD3Q9BW11 206 aa22.45■■□□□ 1.18
PNKP-230ENST00000638016 ASTN2O75129 1339 aaPredicted RBP22.44■■□□□ 1.18
PNKP-230ENST00000638016 TAF5LO75529 589 aa22.44■■□□□ 1.18
PNKP-230ENST00000638016 IFIT5Q13325 482 aaKnown RBP22.44■■□□□ 1.18
PNKP-230ENST00000638016 CST9Q5W186 159 aa22.44■■□□□ 1.18
PNKP-230ENST00000638016 SMC4Q9NTJ3 1288 aa22.44■■□□□ 1.18
PNKP-230ENST00000638016 ZNF804BA4D1E1 1349 aa22.43■■□□□ 1.18
PNKP-230ENST00000638016 PTPRCP08575 1304 aa22.43■■□□□ 1.18
PNKP-230ENST00000638016 DIEXFQ68CQ4 756 aaKnown RBP22.43■■□□□ 1.18
PNKP-230ENST00000638016 PGAP2Q9UHJ9 254 aa22.43■■□□□ 1.18
PNKP-230ENST00000638016 RPS12P25398 132 aaKnown RBP22.42■■□□□ 1.18
PNKP-230ENST00000638016 VEGFBP49765 207 aa22.42■■□□□ 1.18
PNKP-230ENST00000638016 RSBN1LQ6PCB5 846 aaPredicted RBP22.42■■□□□ 1.18
PNKP-230ENST00000638016 ABT1Q9ULW3 272 aaKnown RBP22.42■■□□□ 1.18
PNKP-230ENST00000638016 HSPA1AP0DMV8 641 aaKnown RBP22.41■■□□□ 1.18
PNKP-230ENST00000638016 HSPA1BP0DMV9 641 aaKnown RBP22.41■■□□□ 1.18
PNKP-230ENST00000638016 FBXW7Q969H0 707 aa22.41■■□□□ 1.18
PNKP-230ENST00000638016 ANKRD2Q9GZV1 360 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 8.4 ms