RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 ZNF280AP59817 542 aaPredicted RBP21.54■■□□□ 1.04
CLN3-264ENST00000637985 SCARF1Q14162 830 aa21.54■■□□□ 1.04
CLN3-264ENST00000637985 HSP90AB3PQ58FF7 597 aa21.54■■□□□ 1.04
CLN3-264ENST00000637985 MOB2Q70IA6 237 aa21.54■■□□□ 1.04
CLN3-264ENST00000637985 CFHR5Q9BXR6 569 aa21.54■■□□□ 1.04
CLN3-264ENST00000637985 DLG5Q8TDM6 1919 aa21.53■■□□□ 1.04
CLN3-264ENST00000637985 GPSM2P81274 684 aa21.53■■□□□ 1.04
CLN3-264ENST00000637985 PROSER3Q2NL68 480 aa21.53■■□□□ 1.04
CLN3-264ENST00000637985 CELF1Q92879 486 aaKnown RBP21.53■■□□□ 1.04
CLN3-264ENST00000637985 EYA3Q99504 573 aa21.53■■□□□ 1.04
CLN3-264ENST00000637985 UBE2Q2LH0YL09 131 aa21.52■■□□□ 1.04
CLN3-264ENST00000637985 FKTNO75072 461 aa21.52■■□□□ 1.04
CLN3-264ENST00000637985 CENPFP49454 3210 aa21.52■■□□□ 1.04
CLN3-264ENST00000637985 POTEFA5A3E0 1075 aa21.51■■□□□ 1.03
CLN3-264ENST00000637985 TCIRG1Q13488 830 aa21.51■■□□□ 1.03
CLN3-264ENST00000637985 TBC1D16Q8TBP0 767 aa21.51■■□□□ 1.03
CLN3-264ENST00000637985 ZNF609O15014 1411 aa21.51■■□□□ 1.03
CLN3-264ENST00000637985 PITPNM2Q9BZ72 1349 aa21.51■■□□□ 1.03
CLN3-264ENST00000637985 ANXA1P04083 346 aa21.5■■□□□ 1.03
CLN3-264ENST00000637985 R3HDMLQ9H3Y0 253 aa21.5■■□□□ 1.03
CLN3-264ENST00000637985 SF3B3Q15393 1217 aaKnown RBP21.49■■□□□ 1.03
CLN3-264ENST00000637985 INTS3Q68E01 1043 aaKnown RBP21.49■■□□□ 1.03
CLN3-264ENST00000637985 COPS6Q7L5N1 327 aa21.49■■□□□ 1.03
CLN3-264ENST00000637985 AGBL3Q8NEM8 1001 aa21.49■■□□□ 1.03
CLN3-264ENST00000637985 KIAA0100Q14667 2235 aaKnown RBP21.49■■□□□ 1.03
CLN3-264ENST00000637985 BRCA2P51587 3418 aa21.49■■□□□ 1.03
CLN3-264ENST00000637985 COL4A1P02462 1669 aa21.48■■□□□ 1.03
CLN3-264ENST00000637985 EIF2S2P20042 333 aaKnown RBP21.48■■□□□ 1.03
CLN3-264ENST00000637985 NECTIN2Q92692 538 aa21.48■■□□□ 1.03
CLN3-264ENST00000637985 ZC3H12CQ9C0D7 883 aaKnown RBP21.48■■□□□ 1.03
CLN3-264ENST00000637985 SREBF2Q12772 1141 aa21.47■■□□□ 1.03
CLN3-264ENST00000637985 RSBN1LQ6PCB5 846 aaPredicted RBP21.47■■□□□ 1.03
CLN3-264ENST00000637985 GMLQ99445 158 aa21.47■■□□□ 1.03
CLN3-264ENST00000637985 MYOZ2Q9NPC6 264 aa21.47■■□□□ 1.03
CLN3-264ENST00000637985 PPP2R1AP30153 589 aa21.46■■□□□ 1.03
CLN3-264ENST00000637985 XAGE3Q8WTP9 111 aa21.46■■□□□ 1.03
CLN3-264ENST00000637985 SCAF8Q9UPN6 1271 aaKnown RBP21.46■■□□□ 1.03
CLN3-264ENST00000637985 RBBP6Q7Z6E9 1792 aaKnown RBP21.46■■□□□ 1.03
CLN3-264ENST00000637985 USP17L8P0C7I0 530 aa21.45■■□□□ 1.02
CLN3-264ENST00000637985 AIMP1Q12904 312 aaKnown RBP21.45■■□□□ 1.02
CLN3-264ENST00000637985 MKRN3Q13064 507 aaKnown RBP21.45■■□□□ 1.02
CLN3-264ENST00000637985 PRAMEF18Q5VWM3 479 aa21.45■■□□□ 1.02
CLN3-264ENST00000637985 PODXL2Q9NZ53 605 aa21.45■■□□□ 1.02
CLN3-264ENST00000637985 SZT2Q5T011 3432 aa21.44■■□□□ 1.02
CLN3-264ENST00000637985 TRIM17Q9Y577 477 aa21.44■■□□□ 1.02
CLN3-264ENST00000637985 PSME4Q14997 1843 aa21.43■■□□□ 1.02
CLN3-264ENST00000637985 NEFMP07197 916 aa21.43■■□□□ 1.02
CLN3-264ENST00000637985 RPS8P62241 208 aaKnown RBP21.43■■□□□ 1.02
CLN3-264ENST00000637985 TTLL12Q14166 644 aaPredicted RBP21.43■■□□□ 1.02
CLN3-264ENST00000637985 OTOP1Q7RTM1 612 aa21.43■■□□□ 1.02
CLN3-264ENST00000637985 ZNF428Q96B54 188 aa21.43■■□□□ 1.02
CLN3-264ENST00000637985 TSPYL4Q9UJ04 414 aa21.43■■□□□ 1.02
CLN3-264ENST00000637985 G3V3G9 751 aa21.42■■□□□ 1.02
CLN3-264ENST00000637985 NFE2L2Q16236 605 aa21.42■■□□□ 1.02
CLN3-264ENST00000637985 DCAF8Q5TAQ9 597 aa21.42■■□□□ 1.02
CLN3-264ENST00000637985 FAM89AQ96GI7 184 aa21.42■■□□□ 1.02
CLN3-264ENST00000637985 PLEKHF1Q96S99 279 aa21.42■■□□□ 1.02
CLN3-264ENST00000637985 COLQQ9Y215 455 aaPredicted RBP21.42■■□□□ 1.02
CLN3-264ENST00000637985 ALDH1A1P00352 501 aa21.41■■□□□ 1.02
CLN3-264ENST00000637985 UFL1O94874 794 aa21.4■■□□□ 1.02
CLN3-264ENST00000637985 EN2P19622 333 aaPredicted RBP21.4■■□□□ 1.02
CLN3-264ENST00000637985 PTPN12Q05209 780 aaKnown RBP21.4■■□□□ 1.02
CLN3-264ENST00000637985 NBPF9Q3BBW0 867 aa21.4■■□□□ 1.02
CLN3-264ENST00000637985 NF2P35240 595 aa21.39■■□□□ 1.01
CLN3-264ENST00000637985 SPRYD7Q5W111 196 aa21.39■■□□□ 1.01
CLN3-264ENST00000637985 ARMC5Q96C12 935 aa21.39■■□□□ 1.01
CLN3-264ENST00000637985 ISCA1Q9BUE6 129 aa21.39■■□□□ 1.01
CLN3-264ENST00000637985 TRIOBPQ9H2D6 2365 aa21.38■■□□□ 1.01
CLN3-264ENST00000637985 LDLRAD1Q5T700 205 aa21.38■■□□□ 1.01
CLN3-264ENST00000637985 ANKIB1Q9P2G1 1089 aa21.38■■□□□ 1.01
CLN3-264ENST00000637985 GGA1Q9UJY5 639 aa21.38■■□□□ 1.01
CLN3-264ENST00000637985 PTPN22Q9Y2R2 807 aa21.38■■□□□ 1.01
CLN3-264ENST00000637985 USP17L3A6NCW0 530 aa21.37■■□□□ 1.01
CLN3-264ENST00000637985 USP17L4A6NCW7 530 aa21.37■■□□□ 1.01
CLN3-264ENST00000637985 USP17L1Q7RTZ2 530 aa21.37■■□□□ 1.01
CLN3-264ENST00000637985 CEP290O15078 2479 aa21.37■■□□□ 1.01
CLN3-264ENST00000637985 INHBEP58166 350 aa21.36■■□□□ 1.01
CLN3-264ENST00000637985 ARMC9Q7Z3E5 817 aa21.36■■□□□ 1.01
CLN3-264ENST00000637985 IFNL1Q8IU54 200 aa21.36■■□□□ 1.01
CLN3-264ENST00000637985 PLBD2Q8NHP8 589 aa21.36■■□□□ 1.01
CLN3-264ENST00000637985 BABAM1Q9NWV8 329 aa21.36■■□□□ 1.01
CLN3-264ENST00000637985 PODNQ7Z5L7 613 aa21.35■■□□□ 1.01
CLN3-264ENST00000637985 MANSC4A6NHS7 340 aaPredicted RBP21.34■■□□□ 1.01
CLN3-264ENST00000637985 ATP5J2-PTCD1G3V325 749 aa21.34■■□□□ 1.01
CLN3-264ENST00000637985 WNT10BO00744 389 aa21.34■■□□□ 1.01
CLN3-264ENST00000637985 IRS4O14654 1257 aaPredicted RBP21.34■■□□□ 1.01
CLN3-264ENST00000637985 RTL5Q5HYW3 569 aaPredicted RBP21.34■■□□□ 1.01
CLN3-264ENST00000637985 ERO1AQ96HE7 468 aa21.34■■□□□ 1.01
CLN3-264ENST00000637985 SEC31BQ9NQW1 1179 aa21.34■■□□□ 1.01
CLN3-264ENST00000637985 ANKRD13DQ6ZTN6 518 aa21.33■■□□□ 1.01
CLN3-264ENST00000637985 TRIM28Q13263 835 aaKnown RBP21.32■■□□□ 1
CLN3-264ENST00000637985 PRKG1Q13976 671 aa21.32■■□□□ 1
CLN3-264ENST00000637985 OTUD5Q96G74 571 aa21.32■■□□□ 1
CLN3-264ENST00000637985 IGF2BP3O00425 579 aaKnown RBP eCLIP21.31■■□□□ 1
CLN3-264ENST00000637985 OGFOD1Q8N543 542 aa21.31■■□□□ 1
CLN3-264ENST00000637985 CD99L2Q8TCZ2 262 aa21.31■■□□□ 1
CLN3-264ENST00000637985 ANGEL1Q9UNK9 670 aaKnown RBP21.31■■□□□ 1
CLN3-264ENST00000637985 DLL1O00548 723 aa21.3■■□□□ 1
CLN3-264ENST00000637985 DACT2Q5SW24 774 aa21.3■■□□□ 1
CLN3-264ENST00000637985 CHPF2Q9P2E5 772 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms