RNA–Protein interactions for RNA: ENST00000637285.1

SCN1A-215, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 100 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-215ENST00000637285 MYRFLQ96LU7 910 aa3.71□□□□□ -1.82
SCN1A-215ENST00000637285 HINFPQ9BQA5 517 aa3.71□□□□□ -1.82
SCN1A-215ENST00000637285 KCNK4Q9NYG8 393 aa3.71□□□□□ -1.82
SCN1A-215ENST00000637285 PPME1Q9Y570 386 aa3.71□□□□□ -1.82
SCN1A-215ENST00000637285 SART1O43290 800 aaKnown RBP3.7□□□□□ -1.82
SCN1A-215ENST00000637285 XYLBO75191 536 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 BMP3P12645 472 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 CD68P34810 354 aaPredicted RBP3.7□□□□□ -1.82
SCN1A-215ENST00000637285 DUOXA2Q1HG44 320 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 UVSSAQ2YD98 709 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 BEND4Q6ZU67 534 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 CLEC10AQ8IUN9 316 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 PLEKHM2Q8IWE5 1019 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 FAM20CQ8IXL6 584 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 SIX5Q8N196 739 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 CMTR1Q8N1G2 835 aaKnown RBP3.7□□□□□ -1.82
SCN1A-215ENST00000637285 POU5F2Q8N7G0 328 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 FAM83CQ9BQN1 747 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 CARD10Q9BWT7 1032 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 LACRTQ9GZZ8 138 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 MUC3BQ9H195 1237 aa3.7□□□□□ -1.82
SCN1A-215ENST00000637285 RTCBQ9Y3I0 505 aaKnown RBP3.7□□□□□ -1.82
SCN1A-215ENST00000637285 MMP20O60882 483 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 KIAA1211Q6ZU35 1233 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 WWC1Q8IX03 1113 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 TP53INP2Q8IXH6 220 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 RGL4Q8IZJ4 473 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 MFSD14AQ96MC6 490 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 C11orf16Q9NQ32 467 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 PIM2Q9P1W9 311 aa3.69□□□□□ -1.82
SCN1A-215ENST00000637285 OPLAHO14841 1288 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 DDX3YO15523 660 aaKnown RBP3.68□□□□□ -1.82
SCN1A-215ENST00000637285 ATP9BO43861 1147 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 DKK1O94907 266 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 SEC13P55735 322 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 CACTIN-AS1Q8N1I8 211 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 FBXL6Q8N531 539 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 UBASH3BQ8TF42 649 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 ATG3Q9NT62 314 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 LEMD3Q9Y2U8 911 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 COG6Q9Y2V7 657 aa3.68□□□□□ -1.82
SCN1A-215ENST00000637285 CDC27P30260 824 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 PREPP48147 710 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 MCM6Q14566 821 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 ZNF124Q15973 351 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 ZNF648Q5T619 568 aaPredicted RBP3.67□□□□□ -1.82
SCN1A-215ENST00000637285 CEP135Q66GS9 1140 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 GIMAP7Q8NHV1 300 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 COL26A1Q96A83 441 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 KRTAP4-11Q9BYQ6 195 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 CCDC39Q9UFE4 941 aa3.67□□□□□ -1.82
SCN1A-215ENST00000637285 POM121CA8CG34 1229 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 FSCN2O14926 492 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 EGFRP00533 1210 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 IGFBP4P22692 258 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 RXRBP28702 533 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 ATP11AP98196 1134 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 C11orf91Q3C1V1 193 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 FBLN7Q53RD9 439 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 FAM117BQ6P1L5 589 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 PPP1R3FQ6ZSY5 799 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-215ENST00000637285 CBLL1Q75N03 491 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 ADAMTS19Q8TE59 1207 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 FOXD4L4Q8WXT5 416 aaPredicted RBP3.66□□□□□ -1.82
SCN1A-215ENST00000637285 VTI1AQ96AJ9 217 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 FBXL18Q96ME1 805 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 UCN2Q96RP3 112 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 OSBPL1AQ9BXW6 950 aa3.66□□□□□ -1.82
SCN1A-215ENST00000637285 QTRT2Q9H974 415 aaKnown RBP3.66□□□□□ -1.82
SCN1A-215ENST00000637285 GAS2O43903 313 aaKnown RBP3.65□□□□□ -1.83
SCN1A-215ENST00000637285 ADAM11O75078 769 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 SMNDC1O75940 238 aaKnown RBP eCLIP3.65□□□□□ -1.83
SCN1A-215ENST00000637285 F13BP05160 661 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 FOSL1P15407 271 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 JUNBP17275 347 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-215ENST00000637285 ITGB5P18084 799 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 SOX18P35713 384 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 MSMPQ1L6U9 139 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 HDGFL1Q5TGJ6 251 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 ANKRD34AQ69YU3 496 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 FDX2Q6P4F2 183 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 VSIG10LQ86VR7 867 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 TREML1Q86YW5 311 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 KLHL23Q8NBE8 558 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 KLHDC7BQ96G42 594 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 SPACA7Q96KW9 195 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 SH2B1Q9NRF2 756 aaPredicted RBP3.65□□□□□ -1.83
SCN1A-215ENST00000637285 KCNMB2Q9Y691 235 aa3.65□□□□□ -1.83
SCN1A-215ENST00000637285 FAM177BA6PVY3 158 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 HOXD8P13378 290 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-215ENST00000637285 MAP4P27816 1152 aaKnown RBP3.64□□□□□ -1.83
SCN1A-215ENST00000637285 HYAL2Q12891 473 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 COL13A1Q5TAT6 717 aaPredicted RBP3.64□□□□□ -1.83
SCN1A-215ENST00000637285 LARP1Q6PKG0 1096 aaKnown RBP3.64□□□□□ -1.83
SCN1A-215ENST00000637285 NFXL1Q6ZNB6 911 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 NLRP13Q86W25 1043 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 POM121Q96HA1 1249 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 SEC31BQ9NQW1 1179 aa3.64□□□□□ -1.83
SCN1A-215ENST00000637285 TM4SF5O14894 197 aa3.63□□□□□ -1.83
SCN1A-215ENST00000637285 PRNPP04156 253 aa3.63□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms