RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 PI4KAP1Q8N8J0 262 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 CCDC191Q8NCU4 936 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 SUPT20HQ8NEM7 779 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 JARID2Q92833 1246 aaPredicted RBP14.87□□□□□ -0.03
CLN3-257ENST00000637110 CCDC102AQ96A19 550 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 BCL2L13Q9BXK5 485 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 CWC25Q9NXE8 425 aaPredicted RBP14.87□□□□□ -0.03
CLN3-257ENST00000637110 ZNRF3Q9ULT6 936 aa14.87□□□□□ -0.03
CLN3-257ENST00000637110 VAMP4O75379 141 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 GRAPQ13588 217 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 AOC3Q16853 763 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 RGMBQ6NW40 437 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 G2E3Q7L622 706 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 ZBTB38Q8NAP3 1195 aaPredicted RBP14.86□□□□□ -0.03
CLN3-257ENST00000637110 GRAPLQ8TC17 118 aaPredicted RBP14.86□□□□□ -0.03
CLN3-257ENST00000637110 ZIC5Q96T25 663 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 ATP6V0A2Q9Y487 856 aa14.86□□□□□ -0.03
CLN3-257ENST00000637110 TRPA1O75762 1119 aa14.85□□□□□ -0.03
CLN3-257ENST00000637110 CXCL9Q07325 125 aa14.85□□□□□ -0.03
CLN3-257ENST00000637110 FKBP5Q13451 457 aaPredicted RBP14.85□□□□□ -0.03
CLN3-257ENST00000637110 TNIP1Q15025 636 aa14.85□□□□□ -0.03
CLN3-257ENST00000637110 DPP8Q6V1X1 898 aaPredicted RBP14.85□□□□□ -0.03
CLN3-257ENST00000637110 SPINK5Q9NQ38 1064 aaPredicted RBP14.85□□□□□ -0.03
CLN3-257ENST00000637110 PCCAP05165 728 aaPredicted RBP14.84□□□□□ -0.03
CLN3-257ENST00000637110 FLIIQ13045 1269 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 SF3B3Q15393 1217 aaKnown RBP14.84□□□□□ -0.03
CLN3-257ENST00000637110 PKN2Q16513 984 aaKnown RBP14.84□□□□□ -0.03
CLN3-257ENST00000637110 SLC51AQ86UW1 340 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 SP8Q8IXZ3 490 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 MPNDQ8N594 471 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 C2orf69Q8N8R5 385 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 RNF186Q9NXI6 227 aa14.84□□□□□ -0.03
CLN3-257ENST00000637110 LAMB2P55268 1798 aa14.83□□□□□ -0.03
CLN3-257ENST00000637110 FAM155AB1AL88 458 aaPredicted RBP14.83□□□□□ -0.04
CLN3-257ENST00000637110 H7C1D1 291 aa14.83□□□□□ -0.04
CLN3-257ENST00000637110 ZNF157P51786 506 aaPredicted RBP14.83□□□□□ -0.04
CLN3-257ENST00000637110 KIF23Q02241 960 aaPredicted RBP14.83□□□□□ -0.04
CLN3-257ENST00000637110 REM2Q8IYK8 340 aaPredicted RBP14.83□□□□□ -0.04
CLN3-257ENST00000637110 CCDC85AQ96PX6 553 aaPredicted RBP14.83□□□□□ -0.04
CLN3-257ENST00000637110 HPS5Q9UPZ3 1129 aa14.83□□□□□ -0.04
CLN3-257ENST00000637110 CCER2I3L3R5 266 aa14.82□□□□□ -0.04
CLN3-257ENST00000637110 PDE8AO60658 829 aa14.82□□□□□ -0.04
CLN3-257ENST00000637110 HIRAP54198 1017 aaPredicted RBP14.82□□□□□ -0.04
CLN3-257ENST00000637110 TMC4Q7Z404 712 aa14.82□□□□□ -0.04
CLN3-257ENST00000637110 USP48Q86UV5 1035 aa14.82□□□□□ -0.04
CLN3-257ENST00000637110 TRPM4Q8TD43 1214 aa14.82□□□□□ -0.04
CLN3-257ENST00000637110 CELF1Q92879 486 aaKnown RBP14.82□□□□□ -0.04
CLN3-257ENST00000637110 GBA2Q9HCG7 927 aaPredicted RBP14.82□□□□□ -0.04
CLN3-257ENST00000637110 IGKV5-2P06315 115 aa14.81□□□□□ -0.04
CLN3-257ENST00000637110 CWF19L2Q2TBE0 894 aaKnown RBP14.81□□□□□ -0.04
CLN3-257ENST00000637110 CCDC152Q4G0S7 254 aa14.81□□□□□ -0.04
CLN3-257ENST00000637110 DNAAF4Q8WXU2 420 aa14.81□□□□□ -0.04
CLN3-257ENST00000637110 CNOT7Q9UIV1 285 aaKnown RBP14.81□□□□□ -0.04
CLN3-257ENST00000637110 NSFL1CQ9UNZ2 370 aaKnown RBP14.81□□□□□ -0.04
CLN3-257ENST00000637110 DDX60Q8IY21 1712 aaKnown RBP14.8□□□□□ -0.04
CLN3-257ENST00000637110 TAF1P21675 1872 aa14.8□□□□□ -0.04
CLN3-257ENST00000637110 NEURL1BA8MQ27 555 aa14.8□□□□□ -0.04
CLN3-257ENST00000637110 RPS8P62241 208 aaKnown RBP14.8□□□□□ -0.04
CLN3-257ENST00000637110 KRT26Q7Z3Y9 468 aa14.8□□□□□ -0.04
CLN3-257ENST00000637110 RTFDC1Q9BY42 306 aaPredicted RBP14.8□□□□□ -0.04
CLN3-257ENST00000637110 HDAC9Q9UKV0 1011 aa14.8□□□□□ -0.04
CLN3-257ENST00000637110 C6orf229H3BNL8 230 aa14.79□□□□□ -0.04
CLN3-257ENST00000637110 RAD17O75943 681 aa14.79□□□□□ -0.04
CLN3-257ENST00000637110 POLR2AP24928 1970 aaKnown RBP14.79□□□□□ -0.04
CLN3-257ENST00000637110 KIAA2012Q0VF49 1180 aa14.79□□□□□ -0.04
CLN3-257ENST00000637110 MICALL2Q8IY33 904 aa14.79□□□□□ -0.04
CLN3-257ENST00000637110 SEC31BQ9NQW1 1179 aa14.79□□□□□ -0.04
CLN3-257ENST00000637110 E9PSI1 815 aa14.78□□□□□ -0.04
CLN3-257ENST00000637110 SLC10A3P09131 477 aa14.78□□□□□ -0.04
CLN3-257ENST00000637110 HABP4Q5JVS0 413 aaKnown RBP14.78□□□□□ -0.04
CLN3-257ENST00000637110 UBE3BQ7Z3V4 1068 aa14.78□□□□□ -0.04
CLN3-257ENST00000637110 DCPSQ96C86 337 aaKnown RBP14.78□□□□□ -0.04
CLN3-257ENST00000637110 CSRNP1Q96S65 589 aa14.78□□□□□ -0.04
CLN3-257ENST00000637110 ZNF521Q96K83 1311 aa14.77□□□□□ -0.04
CLN3-257ENST00000637110 F6X3S4 739 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 RIMBP2O15034 1052 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 GPSM2P81274 684 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 GCKRQ14397 625 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 DIEXFQ68CQ4 756 aaKnown RBP14.77□□□□□ -0.05
CLN3-257ENST00000637110 ANKRD18AQ8IVF6 992 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 LINS1Q8NG48 757 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 ANKIB1Q9P2G1 1089 aa14.77□□□□□ -0.05
CLN3-257ENST00000637110 CACNA1FO60840 1977 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 G3V3G9 751 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 CTSWP56202 376 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 WASHC4Q2M389 1173 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 DCAF8Q5TAQ9 597 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 SLC4A10Q6U841 1118 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 DPF2Q92785 391 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 CDC5LQ99459 802 aaKnown RBP14.76□□□□□ -0.05
CLN3-257ENST00000637110 EYA3Q99504 573 aa14.76□□□□□ -0.05
CLN3-257ENST00000637110 H7C1W4 665 aa14.75□□□□□ -0.05
CLN3-257ENST00000637110 SLFN5Q08AF3 891 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 SAMD7Q7Z3H4 446 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 SULF1Q8IWU6 871 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 TTLL11Q8NHH1 800 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 CDCA7LQ96GN5 454 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 CHMP3Q9Y3E7 222 aa14.74□□□□□ -0.05
CLN3-257ENST00000637110 SHTN1A0MZ66 631 aa14.73□□□□□ -0.05
CLN3-257ENST00000637110 ADM5C9JUS6 153 aa14.73□□□□□ -0.05
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms