RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 ECE1P42892 770 aa22.59■■□□□ 1.21
CLN3-247ENST00000636351 RARSP54136 660 aaKnown RBP22.59■■□□□ 1.21
CLN3-247ENST00000636351 TNIP1Q15025 636 aa22.59■■□□□ 1.21
CLN3-247ENST00000636351 TMC4Q7Z404 712 aa22.59■■□□□ 1.21
CLN3-247ENST00000636351 FAM89AQ96GI7 184 aa22.59■■□□□ 1.21
CLN3-247ENST00000636351 CWC25Q9NXE8 425 aaPredicted RBP22.59■■□□□ 1.21
CLN3-247ENST00000636351 PTPRCP08575 1304 aa22.58■■□□□ 1.21
CLN3-247ENST00000636351 DDX60Q8IY21 1712 aaKnown RBP22.58■■□□□ 1.21
CLN3-247ENST00000636351 YDJCA8MPS7 323 aa22.58■■□□□ 1.21
CLN3-247ENST00000636351 TRIM28Q13263 835 aaKnown RBP22.58■■□□□ 1.21
CLN3-247ENST00000636351 RTL5Q5HYW3 569 aaPredicted RBP22.58■■□□□ 1.21
CLN3-247ENST00000636351 SLC4A10Q6U841 1118 aa22.58■■□□□ 1.21
CLN3-247ENST00000636351 CCDC191Q8NCU4 936 aa22.58■■□□□ 1.21
CLN3-247ENST00000636351 GPR101Q96P66 508 aaPredicted RBP22.58■■□□□ 1.21
CLN3-247ENST00000636351 GLIS2Q9BZE0 524 aaPredicted RBP22.58■■□□□ 1.21
CLN3-247ENST00000636351 LRRC37AA6NMS7 1700 aa22.57■■□□□ 1.2
CLN3-247ENST00000636351 CELF2O95319 508 aaKnown RBP22.57■■□□□ 1.2
CLN3-247ENST00000636351 CWF19L2Q2TBE0 894 aaKnown RBP22.57■■□□□ 1.2
CLN3-247ENST00000636351 CELF1Q92879 486 aaKnown RBP22.57■■□□□ 1.2
CLN3-247ENST00000636351 TAF1P21675 1872 aa22.57■■□□□ 1.2
CLN3-247ENST00000636351 SHTN1A0MZ66 631 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 IGKV5-2P06315 115 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 HIRAP54198 1017 aaPredicted RBP22.56■■□□□ 1.2
CLN3-247ENST00000636351 TRPM4Q8TD43 1214 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 PGAP2Q9UHJ9 254 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 TRPM7Q96QT4 1865 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 KIF16BQ96L93 1317 aa22.56■■□□□ 1.2
CLN3-247ENST00000636351 NEURL1BA8MQ27 555 aa22.55■■□□□ 1.2
CLN3-247ENST00000636351 SF3B3Q15393 1217 aaKnown RBP22.55■■□□□ 1.2
CLN3-247ENST00000636351 CNOT7Q9UIV1 285 aaKnown RBP22.55■■□□□ 1.2
CLN3-247ENST00000636351 NSFL1CQ9UNZ2 370 aaKnown RBP22.55■■□□□ 1.2
CLN3-247ENST00000636351 COL4A1P02462 1669 aa22.55■■□□□ 1.2
CLN3-247ENST00000636351 WASHC4Q2M389 1173 aa22.54■■□□□ 1.2
CLN3-247ENST00000636351 SAPCD2Q86UD0 394 aa22.54■■□□□ 1.2
CLN3-247ENST00000636351 ZBTB38Q8NAP3 1195 aaPredicted RBP22.54■■□□□ 1.2
CLN3-247ENST00000636351 LINS1Q8NG48 757 aa22.54■■□□□ 1.2
CLN3-247ENST00000636351 BEGAINQ9BUH8 593 aa22.54■■□□□ 1.2
CLN3-247ENST00000636351 ZNF408Q9H9D4 720 aa22.54■■□□□ 1.2
CLN3-247ENST00000636351 NOB1Q9ULX3 412 aaKnown RBP22.54■■□□□ 1.2
CLN3-247ENST00000636351 RIMBP2O15034 1052 aa22.53■■□□□ 1.2
CLN3-247ENST00000636351 AOC2O75106 756 aa22.53■■□□□ 1.2
CLN3-247ENST00000636351 MICALL2Q8IY33 904 aa22.53■■□□□ 1.2
CLN3-247ENST00000636351 ZC3H15Q8WU90 426 aaKnown RBP22.53■■□□□ 1.2
CLN3-247ENST00000636351 DBNDD1Q9H9R9 158 aa22.53■■□□□ 1.2
CLN3-247ENST00000636351 ZBTB12Q9Y330 459 aaPredicted RBP22.53■■□□□ 1.2
CLN3-247ENST00000636351 C6orf229H3BNL8 230 aa22.52■■□□□ 1.2
CLN3-247ENST00000636351 H7C1D1 291 aa22.52■■□□□ 1.2
CLN3-247ENST00000636351 IRS4O14654 1257 aaPredicted RBP22.52■■□□□ 1.2
CLN3-247ENST00000636351 PCCAP05165 728 aaPredicted RBP22.52■■□□□ 1.2
CLN3-247ENST00000636351 GPSM2P81274 684 aa22.52■■□□□ 1.2
CLN3-247ENST00000636351 JARID2Q92833 1246 aaPredicted RBP22.52■■□□□ 1.2
CLN3-247ENST00000636351 PSMD14O00487 310 aa22.51■■□□□ 1.19
CLN3-247ENST00000636351 BCAR3O75815 825 aa22.51■■□□□ 1.19
CLN3-247ENST00000636351 BEND3Q5T5X7 828 aa22.51■■□□□ 1.19
CLN3-247ENST00000636351 CDC37L1Q7L3B6 337 aa22.51■■□□□ 1.19
CLN3-247ENST00000636351 FRAT1Q92837 279 aaPredicted RBP22.51■■□□□ 1.19
CLN3-247ENST00000636351 POLLQ9UGP5 575 aa22.51■■□□□ 1.19
CLN3-247ENST00000636351 HSP90B1P14625 803 aaKnown RBP22.5■■□□□ 1.19
CLN3-247ENST00000636351 MAP2K2P36507 400 aa22.5■■□□□ 1.19
CLN3-247ENST00000636351 BRPF1P55201 1214 aaPredicted RBP22.5■■□□□ 1.19
CLN3-247ENST00000636351 GCKRQ14397 625 aa22.5■■□□□ 1.19
CLN3-247ENST00000636351 ABHD8Q96I13 439 aa22.5■■□□□ 1.19
CLN3-247ENST00000636351 API5Q9BZZ5 524 aaKnown RBP22.5■■□□□ 1.19
CLN3-247ENST00000636351 SRCIN1Q9C0H9 1055 aa22.5■■□□□ 1.19
CLN3-247ENST00000636351 TSKSQ9UJT2 592 aa22.5■■□□□ 1.19
CLN3-247ENST00000636351 DOK7Q18PE1 504 aa22.49■■□□□ 1.19
CLN3-247ENST00000636351 SAMD7Q7Z3H4 446 aa22.49■■□□□ 1.19
CLN3-247ENST00000636351 UBE3BQ7Z3V4 1068 aa22.49■■□□□ 1.19
CLN3-247ENST00000636351 DPF2Q92785 391 aa22.49■■□□□ 1.19
CLN3-247ENST00000636351 IPO8O15397 1037 aaKnown RBP22.48■■□□□ 1.19
CLN3-247ENST00000636351 ECE2O60344 883 aa22.48■■□□□ 1.19
CLN3-247ENST00000636351 USP48Q86UV5 1035 aa22.48■■□□□ 1.19
CLN3-247ENST00000636351 HHIPL1Q96JK4 782 aa22.48■■□□□ 1.19
CLN3-247ENST00000636351 EYA3Q99504 573 aa22.48■■□□□ 1.19
CLN3-247ENST00000636351 ALDH1L1O75891 902 aa22.47■■□□□ 1.19
CLN3-247ENST00000636351 RPS8P62241 208 aaKnown RBP22.47■■□□□ 1.19
CLN3-247ENST00000636351 TBC1D10BQ4KMP7 808 aaPredicted RBP22.47■■□□□ 1.19
CLN3-247ENST00000636351 DLK2Q6UY11 383 aa22.47■■□□□ 1.19
CLN3-247ENST00000636351 TBC1D16Q8TBP0 767 aa22.47■■□□□ 1.19
CLN3-247ENST00000636351 KCNQ5Q9NR82 932 aa22.47■■□□□ 1.19
CLN3-247ENST00000636351 RTL9Q8NET4 1388 aa22.47■■□□□ 1.19
CLN3-247ENST00000636351 EGFRP00533 1210 aa22.46■■□□□ 1.19
CLN3-247ENST00000636351 SEC31BQ9NQW1 1179 aa22.46■■□□□ 1.19
CLN3-247ENST00000636351 PDE8AO60658 829 aa22.45■■□□□ 1.18
CLN3-247ENST00000636351 C9orf78Q9NZ63 289 aaPredicted RBP22.45■■□□□ 1.18
CLN3-247ENST00000636351 GRM8O00222 908 aa22.44■■□□□ 1.18
CLN3-247ENST00000636351 RPS12P25398 132 aaKnown RBP22.44■■□□□ 1.18
CLN3-247ENST00000636351 RBM26Q5T8P6 1007 aaKnown RBP22.44■■□□□ 1.18
CLN3-247ENST00000636351 RCAN3Q9UKA8 241 aa22.44■■□□□ 1.18
CLN3-247ENST00000636351 H7C1W4 665 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 CCT4P50991 539 aaKnown RBP22.43■■□□□ 1.18
CLN3-247ENST00000636351 HUNKP57058 714 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 ZKSCAN2Q63HK3 967 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 KRT26Q7Z3Y9 468 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 ARHGAP45Q92619 1136 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 ZC3H12CQ9C0D7 883 aaKnown RBP22.43■■□□□ 1.18
CLN3-247ENST00000636351 PODXL2Q9NZ53 605 aa22.43■■□□□ 1.18
CLN3-247ENST00000636351 ADM5C9JUS6 153 aa22.42■■□□□ 1.18
CLN3-247ENST00000636351 UFL1O94874 794 aa22.42■■□□□ 1.18
CLN3-247ENST00000636351 TRIM27P14373 513 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 397.7 ms