RNA–Protein interactions for RNA: ENST00000635578.1

SMARCB1-209, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 1 (best)

Gene SMARCB1, Length 242 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-209ENST00000635578 ATP9BO43861 1147 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 MMP20O60882 483 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 XYLBO75191 536 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 C8AP07357 584 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 HOXA10P31260 410 aaPredicted RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 CD68P34810 354 aaPredicted RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 WWC1Q8IX03 1113 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 CMTR1Q8N1G2 835 aaKnown RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 ADAMTS19Q8TE59 1207 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 DCAF11Q8TEB1 546 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 POM121Q96HA1 1249 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 UCN2Q96RP3 112 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 KRTAP4-2Q9BYR5 136 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 SRA1Q9HD15 236 aaKnown RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 ANGEL1Q9UNK9 670 aaKnown RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 RTCBQ9Y3I0 505 aaKnown RBP2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 PPME1Q9Y570 386 aa2.69□□□□□ -1.98
SMARCB1-209ENST00000635578 DDX3YO15523 660 aaKnown RBP2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 SART1O43290 800 aaKnown RBP2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 DKK1O94907 266 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 BMP3P12645 472 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 SEC13P55735 322 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 DUOXA2Q1HG44 320 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 KIAA1211Q6ZU35 1233 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 BEND4Q6ZU67 534 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 FBXL6Q8N531 539 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 UBASH3BQ8TF42 649 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 FAM46AQ96IP4 442 aaKnown RBP2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 MYRFLQ96LU7 910 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 MFSD14AQ96MC6 490 aa2.68□□□□□ -1.98
SMARCB1-209ENST00000635578 OPLAHO14841 1288 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 PREPP48147 710 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 ATP11AP98196 1134 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 UVSSAQ2YD98 709 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 LCE4AQ5TA78 99 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 HDGFL1Q5TGJ6 251 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 TP53INP2Q8IXH6 220 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 FAM20CQ8IXL6 584 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 COL26A1Q96A83 441 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 VTI1AQ96AJ9 217 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 BCANQ96GW7 911 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 MUC3BQ9H195 1237 aa2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 QTRT2Q9H974 415 aaKnown RBP2.67□□□□□ -1.98
SMARCB1-209ENST00000635578 FSCN2O14926 492 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 GAS2O43903 313 aaKnown RBP2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 SLC24A1O60721 1099 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 ADAM11O75078 769 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 CDC27P30260 824 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 DPYDQ12882 1025 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 C11orf91Q3C1V1 193 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 ZNF648Q5T619 568 aaPredicted RBP2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 CEP135Q66GS9 1140 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 LARP1Q6PKG0 1096 aaKnown RBP2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 TREML1Q86YW5 311 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 CLEC10AQ8IUN9 316 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 POU5F2Q8N7G0 328 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 FOXD4L4Q8WXT5 416 aaPredicted RBP2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 ASIC4Q96FT7 647 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 FAM83CQ9BQN1 747 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 SH2B1Q9NRF2 756 aaPredicted RBP2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 ATG3Q9NT62 314 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 PIM2Q9P1W9 311 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 LEMD3Q9Y2U8 911 aa2.66□□□□□ -1.98
SMARCB1-209ENST00000635578 RAD21O60216 631 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 SMNDC1O75940 238 aaKnown RBP eCLIP2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 EPHA1P21709 976 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 IGFBP4P22692 258 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 RXRBP28702 533 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 NLRP12P59046 1061 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 TRIP4Q15650 581 aaPredicted RBP2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 ZNF124Q15973 351 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 COL13A1Q5TAT6 717 aaPredicted RBP2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 FAM117BQ6P1L5 589 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 FDX2Q6P4F2 183 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 ADAMTSL4Q6UY14 1074 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 PPP1R3FQ6ZSY5 799 aaPredicted RBP2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 SPACA7Q96KW9 195 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 OSBPL1AQ9BXW6 950 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 RASSF4Q9H2L5 321 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 C11orf16Q9NQ32 467 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 CCDC39Q9UFE4 941 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 KCNMB2Q9Y691 235 aa2.65□□□□□ -1.99
SMARCB1-209ENST00000635578 FAM177BA6PVY3 158 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 UBAP1LF5GYI3 381 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 EGFRP00533 1210 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 HOXD8P13378 290 aaPredicted RBP2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 MAP4P27816 1152 aaKnown RBP2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 SOX18P35713 384 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 SCNN1AP37088 669 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 HYAL2Q12891 473 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 CRTC2Q53ET0 693 aaPredicted RBP2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 SGO2Q562F6 1265 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 ANKRD34AQ69YU3 496 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 NLRP13Q86W25 1043 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 KLHL23Q8NBE8 558 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 FLCNQ8NFG4 579 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 GIMAP7Q8NHV1 300 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 KLHDC7BQ96G42 594 aa2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 TFIP11Q9UBB9 837 aaKnown RBP2.64□□□□□ -1.99
SMARCB1-209ENST00000635578 LRFN2Q9ULH4 789 aa2.64□□□□□ -1.99
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms