RNA–Protein interactions for RNA: ENST00000629912.1

NEK3-211, Transcript of NIMA related kinase 3, humanhuman

TSL 5 BASIC

Gene NEK3, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-211ENST00000629912 PAG1Q9NWQ8 432 aa6.68□□□□□ -1.34
NEK3-211ENST00000629912 CYP46A1Q9Y6A2 500 aa6.68□□□□□ -1.34
NEK3-211ENST00000629912 U3KPZ7 1027 aaPredicted RBP6.68□□□□□ -1.34
NEK3-211ENST00000629912 SH3TC1Q8TE82 1336 aa6.68□□□□□ -1.34
NEK3-211ENST00000629912 RTL9Q8NET4 1388 aa6.68□□□□□ -1.34
NEK3-211ENST00000629912 COL5A3P25940 1745 aaPredicted RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 RNF113AO15541 343 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 KCNQ2O43526 872 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 PDE8BO95263 885 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 ZFYP08048 801 aaPredicted RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 PDIA4P13667 645 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 KRT32Q14532 448 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 SLC10A5Q5PT55 438 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 ZGPATQ8N5A5 531 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 VGLL2Q8N8G2 317 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 EDC3Q96F86 508 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 XAGE2Q96GT9 111 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 JAKMIP1Q96N16 626 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 C8orf37Q96NL8 207 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 UPF3BQ9BZI7 483 aaKnown RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 SH2B1Q9NRF2 756 aaPredicted RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 PDRG1Q9NUG6 133 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 USP21Q9UK80 565 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 ZNF652Q9Y2D9 606 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 ZDHHC9Q9Y397 364 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 UBN2Q6ZU65 1347 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 MROH5Q6ZUA9 1318 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 CNTNAP4Q9C0A0 1308 aa6.67□□□□□ -1.34
NEK3-211ENST00000629912 RPAP1Q9BWH6 1393 aaPredicted RBP6.67□□□□□ -1.34
NEK3-211ENST00000629912 AKAP11Q9UKA4 1901 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 GOLGA6L22H0YM25 854 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 GOLIM4O00461 696 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 RPS6KA4O75676 772 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 BRD1O95696 1058 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 CASTP20810 708 aaKnown RBP6.66□□□□□ -1.34
NEK3-211ENST00000629912 FGFR2P21802 821 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 KCNJ4P48050 445 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 AK2P54819 239 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 ANKRD1Q15327 319 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 ATP2B3Q16720 1220 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 ADCK5Q3MIX3 580 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 METTL24Q5JXM2 366 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 TTC39AQ5SRH9 613 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 GORABQ5T7V8 394 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 DDX46Q7L014 1031 aaKnown RBP6.66□□□□□ -1.34
NEK3-211ENST00000629912 ZNF589Q86UQ0 364 aaPredicted RBP6.66□□□□□ -1.34
NEK3-211ENST00000629912 CERKQ8TCT0 537 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 DNAJC2Q99543 621 aaKnown RBP6.66□□□□□ -1.34
NEK3-211ENST00000629912 DSCC1Q9BVC3 393 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 CNNM1Q9NRU3 951 aa6.66□□□□□ -1.34
NEK3-211ENST00000629912 ZSCAN21Q9Y5A6 473 aaPredicted RBP6.66□□□□□ -1.34
NEK3-211ENST00000629912 THSD7AQ9UPZ6 1657 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 NTSR2O95665 410 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 HMGB1P09429 215 aaKnown RBP6.65□□□□□ -1.34
NEK3-211ENST00000629912 UQCRFS1P1P0C7P4 283 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 RPS6KB1P23443 525 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 ADORA1P30542 326 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 SF3B3Q15393 1217 aaKnown RBP6.65□□□□□ -1.34
NEK3-211ENST00000629912 CCDC152Q4G0S7 254 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 ZSCAN25Q6NSZ9 544 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 BLOC1S2Q6QNY1 142 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 LINC00116Q8NCU8 138 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 LPIN2Q92539 896 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 GJD4Q96KN9 370 aaPredicted RBP6.65□□□□□ -1.34
NEK3-211ENST00000629912 ISY1Q9ULR0 285 aaKnown RBP6.65□□□□□ -1.34
NEK3-211ENST00000629912 NIP7Q9Y221 180 aaKnown RBP eCLIP6.65□□□□□ -1.34
NEK3-211ENST00000629912 MYH7P12883 1935 aa6.65□□□□□ -1.34
NEK3-211ENST00000629912 DDX60Q8IY21 1712 aaKnown RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 LAMB2P55268 1798 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 BCORQ6W2J9 1755 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 HCLS1P14317 486 aaPredicted RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 ARID4AP29374 1257 aaPredicted RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 PKP1Q13835 747 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 TTF1Q15361 905 aaPredicted RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 PUM3Q15397 648 aaKnown RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 FBXL16Q8N461 479 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 CCDC85AQ96PX6 553 aaPredicted RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 NEK1Q96PY6 1258 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 SEC62Q99442 399 aaKnown RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 LMBRD1Q9NUN5 540 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 NARFQ9UHQ1 456 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 CTNNA3Q9UI47 895 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 NDUFB9Q9Y6M9 179 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 WDR33Q9C0J8 1336 aaKnown RBP6.64□□□□□ -1.35
NEK3-211ENST00000629912 RIC1Q4ADV7 1423 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 SBF2Q86WG5 1849 aa6.64□□□□□ -1.35
NEK3-211ENST00000629912 A0A0G2JS52 829 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 FSD2A1L4K1 749 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 BTAF1O14981 1849 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 ZBTB22O15209 634 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 CYP21A2P08686 494 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 HSPD1P10809 573 aaKnown RBP6.63□□□□□ -1.35
NEK3-211ENST00000629912 SLC5A1P13866 664 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 CPA1P15085 419 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 ZAP70P43403 619 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 EXOSC10Q01780 885 aaKnown RBP6.63□□□□□ -1.35
NEK3-211ENST00000629912 FKBP4Q02790 459 aaKnown RBP eCLIP6.63□□□□□ -1.35
NEK3-211ENST00000629912 SCARF1Q14162 830 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 UBE3CQ15386 1083 aa6.63□□□□□ -1.35
NEK3-211ENST00000629912 ME3Q16798 604 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms