RNA–Protein interactions for RNA: ENST00000612558.4

CCDC47-207, Transcript of coiled-coil domain containing 47, humanhuman

TSL 5 BASIC

Gene CCDC47, Length 1,586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC47-207ENST00000612558 ZBTB38Q8NAP3 1195 aaPredicted RBP10.96□□□□□ -0.65
CCDC47-207ENST00000612558 SLC4A5Q9BY07 1137 aa10.96□□□□□ -0.65
CCDC47-207ENST00000612558 IL1RAPL2Q9NP60 686 aa10.96□□□□□ -0.65
CCDC47-207ENST00000612558 COPRSQ9NQ92 184 aa10.96□□□□□ -0.65
CCDC47-207ENST00000612558 STAP2Q9UGK3 403 aa10.96□□□□□ -0.65
CCDC47-207ENST00000612558 PA2G4Q9UQ80 394 aaKnown RBP10.96□□□□□ -0.65
CCDC47-207ENST00000612558 NUP98P52948 1817 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 SBF2Q86WG5 1849 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 MX1P20591 662 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 RFX5P48382 616 aaPredicted RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 RTL5Q5HYW3 569 aaPredicted RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 RC3H1Q5TC82 1133 aaKnown RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 LMBR1LQ6UX01 489 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 FAM196AQ6ZSG2 479 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 KRT27Q7Z3Y8 459 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 NLRP10Q86W26 655 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 CLASRPQ8N2M8 674 aaKnown RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 LINC00116Q8NCU8 138 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 UPF1Q92900 1129 aaKnown RBP eCLIP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 UPF2Q9HAU5 1272 aaKnown RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 CNTNAP4Q9C0A0 1308 aa10.95□□□□□ -0.66
CCDC47-207ENST00000612558 COL5A3P25940 1745 aaPredicted RBP10.95□□□□□ -0.66
CCDC47-207ENST00000612558 GOLGA8CPA6NN73 597 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 GPTP24298 496 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 RBM6P78332 1123 aaKnown RBP10.94□□□□□ -0.66
CCDC47-207ENST00000612558 PTPN12Q05209 780 aaKnown RBP10.94□□□□□ -0.66
CCDC47-207ENST00000612558 ZNF34Q8IZ26 560 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 PLA2G12BQ9BX93 195 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 BCL2L12Q9HB09 334 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 CCNL1Q9UK58 526 aaPredicted RBP10.94□□□□□ -0.66
CCDC47-207ENST00000612558 AOX1Q06278 1338 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 CDHR2Q9BYE9 1310 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 EIF5BO60841 1220 aaKnown RBP10.94□□□□□ -0.66
CCDC47-207ENST00000612558 CDC45O75419 566 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 CAMTA2O94983 1202 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 PTPREP23469 700 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 FAM89AQ96GI7 184 aa10.94□□□□□ -0.66
CCDC47-207ENST00000612558 ANKRD36CQ5JPF3 1778 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 SASH1O94885 1247 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 SDSP20132 328 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 PTPN5P54829 565 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 KCNQ4P56696 695 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 CLEC4GQ6UXB4 293 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 NUTM1Q86Y26 1132 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 KLHDC4Q8TBB5 520 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 SIL1Q9H173 461 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 TRMT112Q9UI30 125 aaKnown RBP10.93□□□□□ -0.66
CCDC47-207ENST00000612558 CHMP3Q9Y3E7 222 aa10.93□□□□□ -0.66
CCDC47-207ENST00000612558 RPS6KA4O75676 772 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 CSF1RP07333 972 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 IFIT2P09913 472 aaKnown RBP10.92□□□□□ -0.66
CCDC47-207ENST00000612558 PARP10Q53GL7 1025 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 PPP1R15BQ5SWA1 713 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 TBC1D9Q6ZT07 1266 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 ZNF652Q9Y2D9 606 aa10.92□□□□□ -0.66
CCDC47-207ENST00000612558 TTC41PQ6P2S7 1318 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 UBN2Q6ZU65 1347 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 USP42Q9H9J4 1324 aaKnown RBP10.91□□□□□ -0.66
CCDC47-207ENST00000612558 RGS20O76081 388 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 CCDC57Q2TAC2 916 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 CASC1Q6TDU7 716 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 GPATCH3Q96I76 525 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 IPO9Q96P70 1041 aaKnown RBP10.91□□□□□ -0.66
CCDC47-207ENST00000612558 CRISPLD2Q9H0B8 497 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 BRWD3Q6RI45 1802 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 LY75O60449 1722 aa10.91□□□□□ -0.66
CCDC47-207ENST00000612558 IRS4O14654 1257 aaPredicted RBP10.9□□□□□ -0.66
CCDC47-207ENST00000612558 PDE8AO60658 829 aa10.9□□□□□ -0.66
CCDC47-207ENST00000612558 MFAP1P55081 439 aaKnown RBP10.9□□□□□ -0.66
CCDC47-207ENST00000612558 TSHZ3Q63HK5 1081 aa10.9□□□□□ -0.66
CCDC47-207ENST00000612558 AACSQ86V21 672 aa10.9□□□□□ -0.66
CCDC47-207ENST00000612558 AK7Q96M32 723 aa10.9□□□□□ -0.66
CCDC47-207ENST00000612558 UTP14AQ9BVJ6 771 aaKnown RBP10.9□□□□□ -0.66
CCDC47-207ENST00000612558 SH3TC1Q8TE82 1336 aa10.9□□□□□ -0.66
CCDC47-207ENST00000612558 ERC2O15083 957 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 GLRX3O76003 335 aaKnown RBP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 CIAO1O76071 339 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 HSP90B1P14625 803 aaKnown RBP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 IL15P40933 162 aaPredicted RBP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 SUSD4Q5VX71 490 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 PI4K2BQ8TCG2 481 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 EAF2Q96CJ1 260 aaPredicted RBP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 DDRGK1Q96HY6 314 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 TBC1D32Q96NH3 1257 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 ECHDC1Q9NTX5 307 aa10.9□□□□□ -0.67
CCDC47-207ENST00000612558 NIP7Q9Y221 180 aaKnown RBP eCLIP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 RTCBQ9Y3I0 505 aaKnown RBP10.9□□□□□ -0.67
CCDC47-207ENST00000612558 TRIM6-TRIM34B2RNG4 842 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 EYA2O00167 538 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 GNPATO15228 680 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 HMGB2P26583 209 aaKnown RBP10.89□□□□□ -0.67
CCDC47-207ENST00000612558 RXRBP28702 533 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 FOSBP53539 338 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 CTSWP56202 376 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 TFCP2Q12800 502 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 IFIT5Q13325 482 aaKnown RBP10.89□□□□□ -0.67
CCDC47-207ENST00000612558 SLC27A3Q5K4L6 730 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 ATG9AQ7Z3C6 839 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 SYNE4Q8N205 404 aa10.89□□□□□ -0.67
CCDC47-207ENST00000612558 TTLL11Q8NHH1 800 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms