RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PODXL2Q9NZ53 605 aa20.72■□□□□ 0.91
CCDC28A-202ENST00000611852 DICER1Q9UPY3 1922 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 GNAI2P04899 355 aa20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 IARSP41252 1262 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 MVPQ14764 893 aaKnown RBP20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 SUPT20HQ8NEM7 779 aa20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 ANKIB1Q9P2G1 1089 aa20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 COG6Q9Y2V7 657 aa20.71■□□□□ 0.91
CCDC28A-202ENST00000611852 POLLQ9UGP5 575 aa20.7■□□□□ 0.9
CCDC28A-202ENST00000611852 RRP1P56182 461 aaKnown RBP20.69■□□□□ 0.9
CCDC28A-202ENST00000611852 LDHAL6AQ6ZMR3 332 aa20.69■□□□□ 0.9
CCDC28A-202ENST00000611852 TBC1D16Q8TBP0 767 aa20.69■□□□□ 0.9
CCDC28A-202ENST00000611852 XDHP47989 1333 aa20.69■□□□□ 0.9
CCDC28A-202ENST00000611852 RFX5P48382 616 aaPredicted RBP20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 MTX1Q13505 466 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 KLHDC4Q8TBB5 520 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 VPS33BQ9H267 617 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 TIAM2Q8IVF5 1701 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 ZC3H4Q9UPT8 1303 aaKnown RBP20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 C6orf229H3BNL8 230 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 CHRNDQ07001 517 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 AOC3Q16853 763 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 PUS3Q9BZE2 481 aaKnown RBP20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 GGA1Q9UJY5 639 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 DDX19BQ9UMR2 479 aa20.68■□□□□ 0.9
CCDC28A-202ENST00000611852 COL4A5P29400 1685 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 PPIP5K2O43314 1243 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 UFL1O94874 794 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 KIAA2012Q0VF49 1180 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 LARGE2Q8N3Y3 721 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 ANKRD2Q9GZV1 360 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 CNNM1Q9NRU3 951 aa20.67■□□□□ 0.9
CCDC28A-202ENST00000611852 WTIPA6NIX2 430 aaPredicted RBP20.66■□□□□ 0.9
CCDC28A-202ENST00000611852 PTPN12Q05209 780 aaKnown RBP20.66■□□□□ 0.9
CCDC28A-202ENST00000611852 C1orf115Q9H7X2 142 aa20.66■□□□□ 0.9
CCDC28A-202ENST00000611852 SRGAP3O43295 1099 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 ATP2B4P23634 1241 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 WASHC4Q2M389 1173 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 JDP2Q8WYK2 163 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 GPR101Q96P66 508 aaPredicted RBP20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 EYA3Q99504 573 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 RIPOR2Q9Y4F9 1068 aa20.65■□□□□ 0.9
CCDC28A-202ENST00000611852 LRRC24Q50LG9 513 aa20.64■□□□□ 0.9
CCDC28A-202ENST00000611852 A0A1B0GUL6 1792 aa20.64■□□□□ 0.89
CCDC28A-202ENST00000611852 TAF5LO75529 589 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 HELBQ8NG08 1087 aaPredicted RBP20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 ZBTB40Q9NUA8 1239 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 LEMD3Q9Y2U8 911 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 PNMA6EA0A0J9YXQ4 647 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 FZD9O00144 591 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 RIMBP2O15034 1052 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 COPRSQ9NQ92 184 aa20.63■□□□□ 0.89
CCDC28A-202ENST00000611852 ZNF804BA4D1E1 1349 aa20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 MROH5Q6ZUA9 1318 aa20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 EYA2O00167 538 aa20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 ATP8B2P98198 1209 aa20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 NIM1KQ8IY84 436 aa20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 ZNF784Q8NCA9 323 aaPredicted RBP20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 ZC3H12CQ9C0D7 883 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 CHMP4BQ9H444 224 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 PA2G4Q9UQ80 394 aaKnown RBP20.62■□□□□ 0.89
CCDC28A-202ENST00000611852 FBXO3Q9UK99 471 aa20.61■□□□□ 0.89
CCDC28A-202ENST00000611852 SNAP23O00161 211 aa20.6■□□□□ 0.89
CCDC28A-202ENST00000611852 CIAO1O76071 339 aa20.6■□□□□ 0.89
CCDC28A-202ENST00000611852 ATG9AQ7Z3C6 839 aa20.6■□□□□ 0.89
CCDC28A-202ENST00000611852 SIL1Q9H173 461 aa20.6■□□□□ 0.89
CCDC28A-202ENST00000611852 MED23Q9ULK4 1368 aa20.6■□□□□ 0.89
CCDC28A-202ENST00000611852 GLTPD2A6NH11 291 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 KCNJ4P48050 445 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 POLA2Q14181 598 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 METTL24Q5JXM2 366 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 DPY19L2Q6NUT2 758 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 CEP85Q6P2H3 762 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 VGLL2Q8N8G2 317 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 SSH3Q8TE77 659 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 ZNRF3Q9ULT6 936 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 ZNF541Q9H0D2 1346 aa20.59■□□□□ 0.89
CCDC28A-202ENST00000611852 KLRK1P26718 216 aa20.58■□□□□ 0.89
CCDC28A-202ENST00000611852 TXNRD3Q86VQ6 643 aa20.58■□□□□ 0.89
CCDC28A-202ENST00000611852 ZNF526Q8TF50 670 aaPredicted RBP20.58■□□□□ 0.89
CCDC28A-202ENST00000611852 DBNDD1Q9H9R9 158 aa20.58■□□□□ 0.89
CCDC28A-202ENST00000611852 YDJCA8MPS7 323 aa20.58■□□□□ 0.88
CCDC28A-202ENST00000611852 CENPBP07199 599 aaPredicted RBP20.58■□□□□ 0.88
CCDC28A-202ENST00000611852 DOK7Q18PE1 504 aa20.58■□□□□ 0.88
CCDC28A-202ENST00000611852 SUPT16HQ9Y5B9 1047 aaKnown RBP20.58■□□□□ 0.88
CCDC28A-202ENST00000611852 IRS2Q9Y4H2 1338 aa20.57■□□□□ 0.88
CCDC28A-202ENST00000611852 ECE2O60344 883 aa20.57■□□□□ 0.88
CCDC28A-202ENST00000611852 PDE8BO95263 885 aa20.57■□□□□ 0.88
CCDC28A-202ENST00000611852 EIF6P56537 245 aaKnown RBP20.57■□□□□ 0.88
CCDC28A-202ENST00000611852 UBE4AQ14139 1066 aa20.57■□□□□ 0.88
CCDC28A-202ENST00000611852 KDM2BQ8NHM5 1336 aa20.56■□□□□ 0.88
CCDC28A-202ENST00000611852 DDNO94850 711 aaPredicted RBP20.56■□□□□ 0.88
CCDC28A-202ENST00000611852 IL15P40933 162 aaPredicted RBP20.56■□□□□ 0.88
CCDC28A-202ENST00000611852 C15orf52Q6ZUT6 534 aaKnown RBP20.56■□□□□ 0.88
CCDC28A-202ENST00000611852 GPBP1L1Q9HC44 474 aaPredicted RBP20.56■□□□□ 0.88
CCDC28A-202ENST00000611852 G3V3G9 751 aa20.54■□□□□ 0.88
CCDC28A-202ENST00000611852 CXCL9Q07325 125 aa20.54■□□□□ 0.88
CCDC28A-202ENST00000611852 DCAF8Q5TAQ9 597 aa20.54■□□□□ 0.88
CCDC28A-202ENST00000611852 RPAP2Q8IXW5 612 aaPredicted RBP20.54■□□□□ 0.88
CCDC28A-202ENST00000611852 GPC2Q8N158 579 aa20.54■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 86.7 ms