RNA–Protein interactions for RNA: ENST00000610489.1

SYNE1-240, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 1,754 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-240ENST00000610489 RFX5P48382 616 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-240ENST00000610489 ATP8B2P98198 1209 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 BCS1LQ9Y276 419 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 FER1L6Q2WGJ9 1857 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 ABCB7O75027 752 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 IGHMBP2P38935 993 aaKnown RBP12.89□□□□□ -0.35
SYNE1-240ENST00000610489 TAF7LQ5H9L4 462 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 TMC4Q7Z404 712 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 RPAP2Q8IXW5 612 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-240ENST00000610489 SSH3Q8TE77 659 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 ZNF594Q96JF6 807 aaPredicted RBP12.89□□□□□ -0.35
SYNE1-240ENST00000610489 RNF39Q9H2S5 420 aa12.89□□□□□ -0.35
SYNE1-240ENST00000610489 LTBP1Q14766 1721 aa12.88□□□□□ -0.35
SYNE1-240ENST00000610489 PTPN12Q05209 780 aaKnown RBP12.88□□□□□ -0.35
SYNE1-240ENST00000610489 KLHDC4Q8TBB5 520 aa12.88□□□□□ -0.35
SYNE1-240ENST00000610489 C7orf43Q8WVR3 580 aa12.88□□□□□ -0.35
SYNE1-240ENST00000610489 MPHOSPH8Q99549 860 aa12.88□□□□□ -0.35
SYNE1-240ENST00000610489 BSDC1Q9NW68 430 aaPredicted RBP12.88□□□□□ -0.35
SYNE1-240ENST00000610489 UTRNP46939 3433 aa12.88□□□□□ -0.35
SYNE1-240ENST00000610489 NEFLP07196 543 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 SLC51AQ86UW1 340 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 SIRT2Q8IXJ6 389 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 COPRSQ9NQ92 184 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 ATP6V0A2Q9Y487 856 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 PCDHB15Q9Y5E8 787 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 SNED1Q8TER0 1413 aa12.87□□□□□ -0.35
SYNE1-240ENST00000610489 C21orf2O43822 256 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 HMMRO75330 724 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 OLFM4Q6UX06 510 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 LDHAL6AQ6ZMR3 332 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 SP8Q8IXZ3 490 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 PA2G4Q9UQ80 394 aaKnown RBP12.86□□□□□ -0.35
SYNE1-240ENST00000610489 YBX3P16989 372 aaKnown RBP eCLIP12.86□□□□□ -0.35
SYNE1-240ENST00000610489 CC2D2BQ6DHV5 1058 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 PELP1Q8IZL8 1130 aaKnown RBP12.86□□□□□ -0.35
SYNE1-240ENST00000610489 PUS3Q9BZE2 481 aaKnown RBP12.86□□□□□ -0.35
SYNE1-240ENST00000610489 CNNM1Q9NRU3 951 aa12.86□□□□□ -0.35
SYNE1-240ENST00000610489 CCDC88AQ3V6T2 1871 aa12.85□□□□□ -0.35
SYNE1-240ENST00000610489 CCDC93Q567U6 631 aa12.85□□□□□ -0.35
SYNE1-240ENST00000610489 SOGA3Q5TF21 947 aa12.85□□□□□ -0.35
SYNE1-240ENST00000610489 SIL1Q9H173 461 aa12.85□□□□□ -0.35
SYNE1-240ENST00000610489 TMX4Q9H1E5 349 aaPredicted RBP12.85□□□□□ -0.35
SYNE1-240ENST00000610489 DUOX1Q9NRD9 1551 aa12.85□□□□□ -0.35
SYNE1-240ENST00000610489 EYA2O00167 538 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 CIAO1O76071 339 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 LRRC24Q50LG9 513 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 MINPP1Q9UNW1 487 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 RIPOR2Q9Y4F9 1068 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 SBF1O95248 1867 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 CHRNDQ07001 517 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 GPR162Q16538 588 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 ATG9AQ7Z3C6 839 aa12.84□□□□□ -0.35
SYNE1-240ENST00000610489 GRIPAP1Q4V328 841 aa12.83□□□□□ -0.36
SYNE1-240ENST00000610489 NOP58Q9Y2X3 529 aaKnown RBP12.83□□□□□ -0.36
SYNE1-240ENST00000610489 XDHP47989 1333 aa12.83□□□□□ -0.36
SYNE1-240ENST00000610489 MROH5Q6ZUA9 1318 aa12.83□□□□□ -0.36
SYNE1-240ENST00000610489 SURF6O75683 361 aaKnown RBP12.82□□□□□ -0.36
SYNE1-240ENST00000610489 IL15P40933 162 aaPredicted RBP12.82□□□□□ -0.36
SYNE1-240ENST00000610489 GPSM2P81274 684 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 RTKN2Q8IZC4 609 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 MPNDQ8N594 471 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 ANKRD2Q9GZV1 360 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 PODXL2Q9NZ53 605 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 ANKIB1Q9P2G1 1089 aa12.82□□□□□ -0.36
SYNE1-240ENST00000610489 NSFL1CQ9UNZ2 370 aaKnown RBP12.82□□□□□ -0.36
SYNE1-240ENST00000610489 DICER1Q9UPY3 1922 aaKnown RBP12.82□□□□□ -0.36
SYNE1-240ENST00000610489 G3BP1Q13283 466 aaKnown RBP eCLIP12.81□□□□□ -0.36
SYNE1-240ENST00000610489 HDAC1Q13547 482 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-240ENST00000610489 METTL24Q5JXM2 366 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 DPP8Q6V1X1 898 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-240ENST00000610489 NFKBIEO00221 500 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 GRIN3BO60391 1043 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 OS9Q13438 667 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-240ENST00000610489 PLCD3Q8N3E9 789 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 VGLL2Q8N8G2 317 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 HELBQ8NG08 1087 aaPredicted RBP12.81□□□□□ -0.36
SYNE1-240ENST00000610489 PSMD1Q99460 953 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 EXOC6BQ9Y2D4 811 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 ARAP2Q8WZ64 1704 aa12.81□□□□□ -0.36
SYNE1-240ENST00000610489 LTBP3Q9NS15 1303 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 TAF5LO75529 589 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 UFL1O94874 794 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 FKBP4Q02790 459 aaKnown RBP eCLIP12.8□□□□□ -0.36
SYNE1-240ENST00000610489 TPRNQ4KMQ1 711 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 HSP90AB4PQ58FF6 505 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 ARHGAP27Q6ZUM4 889 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 RTFDC1Q9BY42 306 aaPredicted RBP12.8□□□□□ -0.36
SYNE1-240ENST00000610489 TAOK3Q9H2K8 898 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 GGA1Q9UJY5 639 aa12.8□□□□□ -0.36
SYNE1-240ENST00000610489 SASH1O94885 1247 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 PDE8BO95263 885 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 TBC1D16Q8TBP0 767 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 DCTPP1Q9H773 170 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 CEP126Q9P2H0 1117 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 POLLQ9UGP5 575 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 LEMD3Q9Y2U8 911 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 CHD4Q14839 1912 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 ZNF804BA4D1E1 1349 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 C6orf229H3BNL8 230 aa12.79□□□□□ -0.36
SYNE1-240ENST00000610489 ATP2B4P23634 1241 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 22.5 ms