RNA–Protein interactions for RNA: ENST00000602557.5

CSMD1-216, Transcript of CUB and Sushi multiple domains 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CSMD1, Length 11,740 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-216ENST00000602557 WHAMMP3Q1A5X7 153 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 RAB3IL1Q8TBN0 382 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 SAMD15Q9P1V8 674 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 SNAPC4Q5SXM2 1469 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 NAIPQ13075 1403 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 RPUSD2Q8IZ73 545 aaKnown RBP9.89□□□□□ -0.83
CSMD1-216ENST00000602557 MRFAP1L1Q96HT8 127 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 EPB41L3Q9Y2J2 1087 aaPredicted RBP9.89□□□□□ -0.83
CSMD1-216ENST00000602557 CAPN7Q9Y6W3 813 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 E2F4Q16254 413 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 NDUFAB1O14561 156 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 PNMA8AQ86V59 439 aaPredicted RBP9.89□□□□□ -0.83
CSMD1-216ENST00000602557 RAPGEF3O95398 923 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 TCERG1LQ5VWI1 586 aa9.89□□□□□ -0.83
CSMD1-216ENST00000602557 RBBP5Q15291 538 aaKnown RBP9.88□□□□□ -0.83
CSMD1-216ENST00000602557 PSMD1Q99460 953 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 DCAF8L1A6NGE4 600 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 GBP5Q96PP8 586 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF213O14771 459 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 NLRP5P59047 1200 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 TAOK3Q9H2K8 898 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 RPGRIP1LQ68CZ1 1315 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 TRMT1LQ7Z2T5 733 aaKnown RBP9.88□□□□□ -0.83
CSMD1-216ENST00000602557 MRC2Q9UBG0 1479 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 TMEM67Q5HYA8 995 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF569Q5MCW4 686 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 TOPBP1Q92547 1522 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 NME9Q86XW9 330 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 SEC62Q99442 399 aaKnown RBP9.88□□□□□ -0.83
CSMD1-216ENST00000602557 DNAI2Q9GZS0 605 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 WAPLQ7Z5K2 1190 aa9.88□□□□□ -0.83
CSMD1-216ENST00000602557 RNF41Q9H4P4 317 aaPredicted RBP9.88□□□□□ -0.83
CSMD1-216ENST00000602557 IGHDP01880 384 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 VIMP08670 466 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 ERCC3P19447 782 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 DDX27Q96GQ7 796 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CCDC61Q9Y6R9 512 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CCDC50Q8IVM0 306 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 DNMBPQ6XZF7 1577 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF853P0CG23 659 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 IDEP14735 1019 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 TSNAXIP1Q2TAA8 658 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 C8orf34Q49A92 452 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 ANKLE2Q86XL3 938 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 EHBP1Q8NDI1 1231 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 USP16Q9Y5T5 823 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CEP85LQ5SZL2 805 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 TCHPQ9BT92 498 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CWC25Q9NXE8 425 aaPredicted RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 DDX23Q9BUQ8 820 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 MAP3K2Q9Y2U5 619 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 LUC7L2Q9Y383 392 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CETN1Q12798 172 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 MRFAP1Q9Y605 127 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF365Q70YC5 407 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 EVI5LQ96CN4 794 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 CALML4Q96GE6 196 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 HOMER2Q9NSB8 354 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 FLIIQ13045 1269 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 RAB3GAP1Q15042 981 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 DDX46Q7L014 1031 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 TRMT112Q9UI30 125 aaKnown RBP9.87□□□□□ -0.83
CSMD1-216ENST00000602557 EMILIN1Q9Y6C2 1016 aa9.87□□□□□ -0.83
CSMD1-216ENST00000602557 SYCP3Q8IZU3 236 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 STMN2Q93045 179 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 KCNK9Q9NPC2 374 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 MYCNP04198 464 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-216ENST00000602557 METAP2P50579 478 aaKnown RBP eCLIP9.86□□□□□ -0.83
CSMD1-216ENST00000602557 TTC22Q5TAA0 569 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 RPGRQ92834 1020 aaKnown RBP9.86□□□□□ -0.83
CSMD1-216ENST00000602557 SLC26A6Q9BXS9 759 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 SNRKQ9NRH2 765 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 STIM2Q9P246 746 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF444Q8N0Y2 327 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-216ENST00000602557 TCP11L1Q9NUJ3 509 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 UBE3BQ7Z3V4 1068 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 PTPRCP08575 1304 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 CIB2O75838 187 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 PLEKHA4Q9H4M7 779 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 ECHDC1Q9NTX5 307 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 IFNKQ9P0W0 207 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 COMMD10Q9Y6G5 202 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 WDR78Q5VTH9 848 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 ANKRD18BA2A2Z9 1011 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 GOLGA6CA6NDK9 693 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 GOLGA6DP0CG33 693 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 GPTP24298 496 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 GOLGA6AQ9NYA3 693 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 ORC3Q9UBD5 711 aaPredicted RBP9.86□□□□□ -0.83
CSMD1-216ENST00000602557 GUCA1BQ9UMX6 200 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 N4BP3O15049 544 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 MFSD6Q6ZSS7 791 aa9.86□□□□□ -0.83
CSMD1-216ENST00000602557 ZNF622Q969S3 477 aaKnown RBP eCLIP9.86□□□□□ -0.836e-7■■□□□ 11.7
CSMD1-216ENST00000602557 BMP2KLQ5H9B9 411 aa9.85□□□□□ -0.83
CSMD1-216ENST00000602557 UBLCP1Q8WVY7 318 aaPredicted RBP9.85□□□□□ -0.83
CSMD1-216ENST00000602557 SLC24A3Q9HC58 644 aa9.85□□□□□ -0.83
CSMD1-216ENST00000602557 EXOC1Q9NV70 894 aa9.85□□□□□ -0.83
CSMD1-216ENST00000602557 LMOD1P29536 600 aaPredicted RBP9.85□□□□□ -0.83
CSMD1-216ENST00000602557 FERMT2Q96AC1 680 aa9.85□□□□□ -0.83
CSMD1-216ENST00000602557 ZSCAN22P10073 491 aaPredicted RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms