RNA–Protein interactions for RNA: ENST00000602239.1

SHKBP1-228, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 450 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-228ENST00000602239 PDE8AO60658 829 aa20.3■□□□□ 0.84
SHKBP1-228ENST00000602239 MAP2K1Q02750 393 aaPredicted RBP20.3■□□□□ 0.84
SHKBP1-228ENST00000602239 SAPCD2Q86UD0 394 aa20.3■□□□□ 0.84
SHKBP1-228ENST00000602239 RTL9Q8NET4 1388 aa20.3■□□□□ 0.84
SHKBP1-228ENST00000602239 PI4KAP2A4QPH2 592 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 AOC2O75106 756 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 DDX58O95786 925 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 IGKV5-2P06315 115 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 HSPA8P11142 646 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 CCDC152Q4G0S7 254 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 USP48Q86UV5 1035 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 WWC1Q8IX03 1113 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 PI4KAP1Q8N8J0 262 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 EYA3Q99504 573 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 ZC3H12CQ9C0D7 883 aaKnown RBP20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 ZNF408Q9H9D4 720 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 PODXL2Q9NZ53 605 aa20.29■□□□□ 0.84
SHKBP1-228ENST00000602239 TBC1D10BQ4KMP7 808 aaPredicted RBP20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 RBM26Q5T8P6 1007 aaKnown RBP20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 KSR2Q6VAB6 950 aa20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 CDC37L1Q7L3B6 337 aa20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 G2E3Q7L622 706 aa20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 ANKIB1Q9P2G1 1089 aa20.28■□□□□ 0.84
SHKBP1-228ENST00000602239 WTIPA6NIX2 430 aaPredicted RBP20.27■□□□□ 0.84
SHKBP1-228ENST00000602239 UFL1O94874 794 aa20.27■□□□□ 0.84
SHKBP1-228ENST00000602239 HSP90B1P14625 803 aaKnown RBP20.27■□□□□ 0.84
SHKBP1-228ENST00000602239 ECE1P42892 770 aa20.27■□□□□ 0.84
SHKBP1-228ENST00000602239 VIL1P09327 827 aaKnown RBP20.26■□□□□ 0.83
SHKBP1-228ENST00000602239 CCDC27Q2M243 656 aa20.26■□□□□ 0.83
SHKBP1-228ENST00000602239 CHMP4AQ9BY43 222 aa20.26■□□□□ 0.83
SHKBP1-228ENST00000602239 GGA1Q9UJY5 639 aa20.26■□□□□ 0.83
SHKBP1-228ENST00000602239 RPS12P25398 132 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-228ENST00000602239 CWF19L2Q2TBE0 894 aaKnown RBP20.25■□□□□ 0.83
SHKBP1-228ENST00000602239 TWISTNBQ3B726 338 aaPredicted RBP20.25■□□□□ 0.83
SHKBP1-228ENST00000602239 SCN9AQ15858 1988 aa20.25■□□□□ 0.83
SHKBP1-228ENST00000602239 SLC4A2P04920 1241 aa20.24■□□□□ 0.83
SHKBP1-228ENST00000602239 ANKRD18AQ8IVF6 992 aa20.24■□□□□ 0.83
SHKBP1-228ENST00000602239 TTLL11Q8NHH1 800 aa20.24■□□□□ 0.83
SHKBP1-228ENST00000602239 STK31Q9BXU1 1019 aa20.24■□□□□ 0.83
SHKBP1-228ENST00000602239 G3V3G9 751 aa20.23■□□□□ 0.83
SHKBP1-228ENST00000602239 MAP2K2P36507 400 aa20.23■□□□□ 0.83
SHKBP1-228ENST00000602239 CTSWP56202 376 aa20.23■□□□□ 0.83
SHKBP1-228ENST00000602239 DCAF8Q5TAQ9 597 aa20.23■□□□□ 0.83
SHKBP1-228ENST00000602239 POLR2AP24928 1970 aaKnown RBP20.23■□□□□ 0.83
SHKBP1-228ENST00000602239 KRT26Q7Z3Y9 468 aa20.22■□□□□ 0.83
SHKBP1-228ENST00000602239 HHIPL1Q96JK4 782 aa20.22■□□□□ 0.83
SHKBP1-228ENST00000602239 GREM2Q9H772 168 aa20.22■□□□□ 0.83
SHKBP1-228ENST00000602239 TSKSQ9UJT2 592 aa20.22■□□□□ 0.83
SHKBP1-228ENST00000602239 ASTN2O75129 1339 aaPredicted RBP20.22■□□□□ 0.83
SHKBP1-228ENST00000602239 THSD7BQ9C0I4 1608 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 NEURL1BA8MQ27 555 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 ADM5C9JUS6 153 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 H7C1W4 665 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 NEXNQ0ZGT2 675 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 ZIC5Q96T25 663 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 BEGAINQ9BUH8 593 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 SALL2Q9Y467 1007 aaPredicted RBP20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 XDHP47989 1333 aa20.21■□□□□ 0.83
SHKBP1-228ENST00000602239 KIF4BQ2VIQ3 1234 aa20.2■□□□□ 0.82
SHKBP1-228ENST00000602239 DCPSQ96C86 337 aaKnown RBP20.2■□□□□ 0.82
SHKBP1-228ENST00000602239 MRS2Q9HD23 443 aa20.2■□□□□ 0.82
SHKBP1-228ENST00000602239 MINPP1Q9UNW1 487 aa20.2■□□□□ 0.82
SHKBP1-228ENST00000602239 IL16Q14005 1332 aa20.2■□□□□ 0.82
SHKBP1-228ENST00000602239 ATP2B4P23634 1241 aa20.19■□□□□ 0.82
SHKBP1-228ENST00000602239 RSBN1LQ6PCB5 846 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-228ENST00000602239 UBE3BQ7Z3V4 1068 aa20.19■□□□□ 0.82
SHKBP1-228ENST00000602239 CDC5LQ99459 802 aaKnown RBP20.19■□□□□ 0.82
SHKBP1-228ENST00000602239 BSDC1Q9NW68 430 aaPredicted RBP20.19■□□□□ 0.82
SHKBP1-228ENST00000602239 HUNKP57058 714 aa20.18■□□□□ 0.82
SHKBP1-228ENST00000602239 ZNF280AP59817 542 aaPredicted RBP20.18■□□□□ 0.82
SHKBP1-228ENST00000602239 FLIIQ13045 1269 aa20.18■□□□□ 0.82
SHKBP1-228ENST00000602239 GMLQ99445 158 aa20.18■□□□□ 0.82
SHKBP1-228ENST00000602239 GCKRQ14397 625 aa20.17■□□□□ 0.82
SHKBP1-228ENST00000602239 NCBP3Q53F19 620 aaKnown RBP20.17■□□□□ 0.82
SHKBP1-228ENST00000602239 GGA3Q9NZ52 723 aa20.17■□□□□ 0.82
SHKBP1-228ENST00000602239 FANCIQ9NVI1 1328 aa20.17■□□□□ 0.82
SHKBP1-228ENST00000602239 VAMP4O75379 141 aa20.16■□□□□ 0.82
SHKBP1-228ENST00000602239 SCARF1Q14162 830 aa20.16■□□□□ 0.82
SHKBP1-228ENST00000602239 AGBL3Q8NEM8 1001 aa20.16■□□□□ 0.82
SHKBP1-228ENST00000602239 GBA2Q9HCG7 927 aaPredicted RBP20.16■□□□□ 0.82
SHKBP1-228ENST00000602239 USP17L3A6NCW0 530 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 USP17L4A6NCW7 530 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 CASP7P55210 303 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 FKBP5Q13451 457 aaPredicted RBP20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 USP17L1Q7RTZ2 530 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 PODNQ7Z5L7 613 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 TXNRD3Q86VQ6 643 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 ABHD8Q96I13 439 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 MXD3Q9BW11 206 aa20.15■□□□□ 0.82
SHKBP1-228ENST00000602239 USP17L8P0C7I0 530 aa20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 CCT4P50991 539 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 BRPF1P55201 1214 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 EXOSC9Q06265 439 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 ANGEL2Q5VTE6 544 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 SULF1Q8IWU6 871 aa20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 C2orf69Q8N8R5 385 aa20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 DNAAF4Q8WXU2 420 aa20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 SPINK5Q9NQ38 1064 aaPredicted RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 SCAF8Q9UPN6 1271 aaKnown RBP20.14■□□□□ 0.81
SHKBP1-228ENST00000602239 FAM155AB1AL88 458 aaPredicted RBP20.13■□□□□ 0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms