RNA–Protein interactions for RNA: ENST00000600840.1

TRIM28-214, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 338 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-214ENST00000600840 GRAPQ13588 217 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 ALDH1L2Q3SY69 923 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 CCDC30Q5VVM6 783 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 G2E3Q7L622 706 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 NIM1KQ8IY84 436 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 GRAPLQ8TC17 118 aaPredicted RBP11.19□□□□□ -0.62
TRIM28-214ENST00000600840 HHIPL1Q96JK4 782 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 ADARB2Q9NS39 739 aaKnown RBP11.19□□□□□ -0.62
TRIM28-214ENST00000600840 HYPKQ9NX55 129 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 AKAP11Q9UKA4 1901 aa11.19□□□□□ -0.62
TRIM28-214ENST00000600840 SHTN1A0MZ66 631 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 YDJCA8MPS7 323 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 HIRAP54198 1017 aaPredicted RBP11.18□□□□□ -0.62
TRIM28-214ENST00000600840 NOGQ13253 232 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 TRIM28Q13263 835 aaKnown RBP11.18□□□□□ -0.62
TRIM28-214ENST00000600840 SF3B3Q15393 1217 aaKnown RBP11.18□□□□□ -0.62
TRIM28-214ENST00000600840 GRIPAP1Q4V328 841 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 DDX46Q7L014 1031 aaKnown RBP11.18□□□□□ -0.62
TRIM28-214ENST00000600840 RIC3Q7Z5B4 369 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 MPNDQ8N594 471 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 TRPM4Q8TD43 1214 aa11.18□□□□□ -0.62
TRIM28-214ENST00000600840 FAM155AB1AL88 458 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-214ENST00000600840 IRS4O14654 1257 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-214ENST00000600840 SLC4A2P04920 1241 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 GMPSP49915 693 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-214ENST00000600840 HUNKP57058 714 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 KIAA2012Q0VF49 1180 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 DPP8Q6V1X1 898 aaPredicted RBP11.17□□□□□ -0.62
TRIM28-214ENST00000600840 MYD88Q99836 296 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 CHMP4AQ9BY43 222 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 SEC31BQ9NQW1 1179 aa11.17□□□□□ -0.62
TRIM28-214ENST00000600840 POLR2AP24928 1970 aaKnown RBP11.16□□□□□ -0.62
TRIM28-214ENST00000600840 TRPA1O75762 1119 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 BCAR3O75815 825 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 RAD17O75943 681 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 GPSM2P81274 684 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 KCNQ5Q9NR82 932 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 POLLQ9UGP5 575 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 PGAP2Q9UHJ9 254 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 ZNRF3Q9ULT6 936 aa11.16□□□□□ -0.62
TRIM28-214ENST00000600840 KIF23Q02241 960 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-214ENST00000600840 USP48Q86UV5 1035 aa11.15□□□□□ -0.62
TRIM28-214ENST00000600840 ZBTB38Q8NAP3 1195 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-214ENST00000600840 SUPT20HQ8NEM7 779 aa11.15□□□□□ -0.62
TRIM28-214ENST00000600840 CCDC85AQ96PX6 553 aaPredicted RBP11.15□□□□□ -0.62
TRIM28-214ENST00000600840 VPS33BQ9H267 617 aa11.15□□□□□ -0.62
TRIM28-214ENST00000600840 RNF186Q9NXI6 227 aa11.15□□□□□ -0.62
TRIM28-214ENST00000600840 SCN9AQ15858 1988 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 WTIPA6NIX2 430 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-214ENST00000600840 RIMBP2O15034 1052 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 IGKV5-2P06315 115 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 CDC37L1Q7L3B6 337 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 METTL22Q9BUU2 404 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-214ENST00000600840 BCL2L13Q9BXK5 485 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 TMX4Q9H1E5 349 aaPredicted RBP11.14□□□□□ -0.63
TRIM28-214ENST00000600840 DBNDD1Q9H9R9 158 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 RCAN3Q9UKA8 241 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 NSFL1CQ9UNZ2 370 aaKnown RBP11.14□□□□□ -0.63
TRIM28-214ENST00000600840 HPS5Q9UPZ3 1129 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 MAP3K2Q9Y2U5 619 aa11.14□□□□□ -0.63
TRIM28-214ENST00000600840 PI4KAP2A4QPH2 592 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 PCCAP05165 728 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-214ENST00000600840 RPS8P62241 208 aaKnown RBP11.13□□□□□ -0.63
TRIM28-214ENST00000600840 FLIIQ13045 1269 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 DOK7Q18PE1 504 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 RGMBQ6NW40 437 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 CTU1Q7Z7A3 348 aaKnown RBP11.13□□□□□ -0.63
TRIM28-214ENST00000600840 PI4KAP1Q8N8J0 262 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 ARHGAP45Q92619 1136 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 SAGE1Q9NXZ1 904 aa11.13□□□□□ -0.63
TRIM28-214ENST00000600840 ZBTB12Q9Y330 459 aaPredicted RBP11.13□□□□□ -0.63
TRIM28-214ENST00000600840 PSMD14O00487 310 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 EGFRP00533 1210 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 WASHC4Q2M389 1173 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 CWF19L2Q2TBE0 894 aaKnown RBP11.12□□□□□ -0.63
TRIM28-214ENST00000600840 KSR2Q6VAB6 950 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 CCDC191Q8NCU4 936 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 TBC1D16Q8TBP0 767 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 STK31Q9BXU1 1019 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 NOB1Q9ULX3 412 aaKnown RBP11.12□□□□□ -0.63
TRIM28-214ENST00000600840 TNNQ9UQP3 1299 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 RTL9Q8NET4 1388 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 SPEF2Q9C093 1822 aa11.12□□□□□ -0.63
TRIM28-214ENST00000600840 ADM5C9JUS6 153 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 C6orf229H3BNL8 230 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 PDE8AO60658 829 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 SAMD7Q7Z3H4 446 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 TMC4Q7Z404 712 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 ZC3H15Q8WU90 426 aaKnown RBP11.11□□□□□ -0.63
TRIM28-214ENST00000600840 GBA2Q9HCG7 927 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-214ENST00000600840 SMC4Q9NTJ3 1288 aa11.11□□□□□ -0.63
TRIM28-214ENST00000600840 CWC25Q9NXE8 425 aaPredicted RBP11.11□□□□□ -0.63
TRIM28-214ENST00000600840 CNOT7Q9UIV1 285 aaKnown RBP11.11□□□□□ -0.63
TRIM28-214ENST00000600840 MYH3P11055 1940 aa11.1□□□□□ -0.63
TRIM28-214ENST00000600840 ECE2O60344 883 aa11.1□□□□□ -0.63
TRIM28-214ENST00000600840 ZNF157P51786 506 aaPredicted RBP11.1□□□□□ -0.63
TRIM28-214ENST00000600840 HABP4Q5JVS0 413 aaKnown RBP11.1□□□□□ -0.63
TRIM28-214ENST00000600840 MICALL2Q8IY33 904 aa11.1□□□□□ -0.63
TRIM28-214ENST00000600840 CSRNP1Q96S65 589 aa11.1□□□□□ -0.63
TRIM28-214ENST00000600840 PTPRCP08575 1304 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 58.3 ms