RNA–Protein interactions for RNA: ENST00000598553.1

VRK3-214, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 595 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-214ENST00000598553 FKBP5Q13451 457 aaPredicted RBP13.67□□□□□ -0.22
VRK3-214ENST00000598553 GCKRQ14397 625 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 FAM161AQ3B820 660 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 DNAAF4Q8WXU2 420 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 CREBZFQ9NS37 354 aa13.67□□□□□ -0.22
VRK3-214ENST00000598553 THSD7BQ9C0I4 1608 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 UFL1O94874 794 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 KLRK1P26718 216 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 LMOD1P29536 600 aaPredicted RBP13.66□□□□□ -0.22
VRK3-214ENST00000598553 WASHC4Q2M389 1173 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 CCDC152Q4G0S7 254 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 TMC4Q7Z404 712 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 VPS33BQ9H267 617 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 CNTNAP1P78357 1384 aa13.66□□□□□ -0.22
VRK3-214ENST00000598553 EPHA10Q5JZY3 1008 aa13.65□□□□□ -0.22
VRK3-214ENST00000598553 BEND3Q5T5X7 828 aa13.65□□□□□ -0.22
VRK3-214ENST00000598553 PNMA8AQ86V59 439 aaPredicted RBP13.65□□□□□ -0.22
VRK3-214ENST00000598553 CDCA7LQ96GN5 454 aa13.65□□□□□ -0.22
VRK3-214ENST00000598553 TMX4Q9H1E5 349 aaPredicted RBP13.65□□□□□ -0.22
VRK3-214ENST00000598553 PODXL2Q9NZ53 605 aa13.65□□□□□ -0.22
VRK3-214ENST00000598553 ASTN2O75129 1339 aaPredicted RBP13.64□□□□□ -0.23
VRK3-214ENST00000598553 SNAP23O00161 211 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 HSPA1AP0DMV8 641 aaKnown RBP13.64□□□□□ -0.23
VRK3-214ENST00000598553 HSPA1BP0DMV9 641 aaKnown RBP13.64□□□□□ -0.23
VRK3-214ENST00000598553 NEXNQ0ZGT2 675 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 SAMD7Q7Z3H4 446 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 TXNRD3Q86VQ6 643 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 ANKRD18AQ8IVF6 992 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 MICALL2Q8IY33 904 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 PLA2G12BQ9BX93 195 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 CHMP4AQ9BY43 222 aa13.64□□□□□ -0.23
VRK3-214ENST00000598553 GLIS2Q9BZE0 524 aaPredicted RBP13.64□□□□□ -0.23
VRK3-214ENST00000598553 ADARB2Q9NS39 739 aaKnown RBP13.64□□□□□ -0.23
VRK3-214ENST00000598553 TMEM88BA6NKF7 163 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 FOXO4P98177 505 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 COL13A1Q5TAT6 717 aaPredicted RBP13.63□□□□□ -0.23
VRK3-214ENST00000598553 CST9Q5W186 159 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 USP50Q70EL3 339 aaPredicted RBP13.63□□□□□ -0.23
VRK3-214ENST00000598553 LINS1Q8NG48 757 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 MXD3Q9BW11 206 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 BCL2L13Q9BXK5 485 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 CNOT7Q9UIV1 285 aaKnown RBP13.63□□□□□ -0.23
VRK3-214ENST00000598553 MINPP1Q9UNW1 487 aa13.63□□□□□ -0.23
VRK3-214ENST00000598553 VEGFBP49765 207 aa13.62□□□□□ -0.23
VRK3-214ENST00000598553 ANKIB1Q9P2G1 1089 aa13.62□□□□□ -0.23
VRK3-214ENST00000598553 GGA1Q9UJY5 639 aa13.62□□□□□ -0.23
VRK3-214ENST00000598553 XDHP47989 1333 aa13.62□□□□□ -0.23
VRK3-214ENST00000598553 CSF1RP07333 972 aa13.61□□□□□ -0.23
VRK3-214ENST00000598553 ITGA6P23229 1130 aa13.61□□□□□ -0.23
VRK3-214ENST00000598553 TBC1D10BQ4KMP7 808 aaPredicted RBP13.61□□□□□ -0.23
VRK3-214ENST00000598553 MYH16Q9H6N6 1097 aa13.61□□□□□ -0.23
VRK3-214ENST00000598553 RBM26Q5T8P6 1007 aaKnown RBP13.6□□□□□ -0.23
VRK3-214ENST00000598553 MRPL50Q8N5N7 158 aaKnown RBP13.6□□□□□ -0.23
VRK3-214ENST00000598553 KAZALD1Q96I82 304 aa13.6□□□□□ -0.23
VRK3-214ENST00000598553 ZNF594Q96JF6 807 aaPredicted RBP13.6□□□□□ -0.23
VRK3-214ENST00000598553 CDC5LQ99459 802 aaKnown RBP13.6□□□□□ -0.23
VRK3-214ENST00000598553 EYA3Q99504 573 aa13.6□□□□□ -0.23
VRK3-214ENST00000598553 PGAP2Q9UHJ9 254 aa13.6□□□□□ -0.23
VRK3-214ENST00000598553 IRS2Q9Y4H2 1338 aa13.6□□□□□ -0.23
VRK3-214ENST00000598553 RASSF10A6NK89 507 aa13.59□□□□□ -0.23
VRK3-214ENST00000598553 CCT4P50991 539 aaKnown RBP13.59□□□□□ -0.23
VRK3-214ENST00000598553 SLFN5Q08AF3 891 aa13.59□□□□□ -0.23
VRK3-214ENST00000598553 TNIP1Q15025 636 aa13.59□□□□□ -0.23
VRK3-214ENST00000598553 ZC3H12CQ9C0D7 883 aaKnown RBP13.59□□□□□ -0.23
VRK3-214ENST00000598553 BSDC1Q9NW68 430 aaPredicted RBP13.59□□□□□ -0.23
VRK3-214ENST00000598553 SCAF8Q9UPN6 1271 aaKnown RBP13.59□□□□□ -0.23
VRK3-214ENST00000598553 MED23Q9ULK4 1368 aa13.58□□□□□ -0.23
VRK3-214ENST00000598553 ZNF609O15014 1411 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 ADM5C9JUS6 153 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 VIL1P09327 827 aaKnown RBP13.58□□□□□ -0.24
VRK3-214ENST00000598553 HSP90B1P14625 803 aaKnown RBP13.58□□□□□ -0.24
VRK3-214ENST00000598553 ATP2B4P23634 1241 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 SLC4A10Q6U841 1118 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 HELBQ8NG08 1087 aaPredicted RBP13.58□□□□□ -0.24
VRK3-214ENST00000598553 SSH1Q8WYL5 1049 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 SUCLG2Q96I99 432 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 GMLQ99445 158 aa13.58□□□□□ -0.24
VRK3-214ENST00000598553 ABT1Q9ULW3 272 aaKnown RBP13.58□□□□□ -0.24
VRK3-214ENST00000598553 ECM29Q5VYK3 1845 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 GRM8O00222 908 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 FOXN1O15353 648 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 TAF5LO75529 589 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 NBPF7P0C2Y1 421 aaPredicted RBP13.57□□□□□ -0.24
VRK3-214ENST00000598553 CHRNDQ07001 517 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 IFFO2Q5TF58 517 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 CYP4F22Q6NT55 531 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 USP48Q86UV5 1035 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 DPF2Q92785 391 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 PCNTO95613 3336 aa13.57□□□□□ -0.24
VRK3-214ENST00000598553 ARAP2Q8WZ64 1704 aa13.56□□□□□ -0.24
VRK3-214ENST00000598553 CELF2O95319 508 aaKnown RBP13.56□□□□□ -0.24
VRK3-214ENST00000598553 KIF4BQ2VIQ3 1234 aa13.56□□□□□ -0.24
VRK3-214ENST00000598553 RSBN1LQ6PCB5 846 aaPredicted RBP13.56□□□□□ -0.24
VRK3-214ENST00000598553 LMBR1LQ6UX01 489 aa13.56□□□□□ -0.24
VRK3-214ENST00000598553 ZNF408Q9H9D4 720 aa13.56□□□□□ -0.24
VRK3-214ENST00000598553 CHMP3Q9Y3E7 222 aa13.56□□□□□ -0.24
VRK3-214ENST00000598553 H7C1D1 291 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 AOC2O75106 756 aa13.55□□□□□ -0.24
VRK3-214ENST00000598553 IGHMBP2P38935 993 aaKnown RBP13.55□□□□□ -0.24
VRK3-214ENST00000598553 GRM1Q13255 1194 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms