RNA–Protein interactions for RNA: ENST00000597146.1

LIG1-214, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 589 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-214ENST00000597146 GPR25O00155 361 aa20.47■□□□□ 0.87
LIG1-214ENST00000597146 GPSM2P81274 684 aa20.47■□□□□ 0.87
LIG1-214ENST00000597146 PDIA6Q15084 440 aa20.47■□□□□ 0.87
LIG1-214ENST00000597146 CELF1Q92879 486 aaKnown RBP20.47■□□□□ 0.87
LIG1-214ENST00000597146 TRMT112Q9UI30 125 aaKnown RBP20.47■□□□□ 0.87
LIG1-214ENST00000597146 SCAF8Q9UPN6 1271 aaKnown RBP20.47■□□□□ 0.87
LIG1-214ENST00000597146 TMC4Q7Z404 712 aa20.46■□□□□ 0.87
LIG1-214ENST00000597146 SH3TC1Q8TE82 1336 aa20.46■□□□□ 0.87
LIG1-214ENST00000597146 KIAA0100Q14667 2235 aaKnown RBP20.45■□□□□ 0.86
LIG1-214ENST00000597146 FXR1P51114 621 aaKnown RBP eCLIP20.45■□□□□ 0.86
LIG1-214ENST00000597146 POTEFA5A3E0 1075 aa20.44■□□□□ 0.86
LIG1-214ENST00000597146 UBE2Q2LH0YL09 131 aa20.44■□□□□ 0.86
LIG1-214ENST00000597146 EIF2S2P20042 333 aaKnown RBP20.44■□□□□ 0.86
LIG1-214ENST00000597146 FKBP1BP68106 108 aa20.44■□□□□ 0.86
LIG1-214ENST00000597146 MKRN3Q13064 507 aaKnown RBP20.44■□□□□ 0.86
LIG1-214ENST00000597146 SCARF1Q14162 830 aa20.44■□□□□ 0.86
LIG1-214ENST00000597146 VIL1P09327 827 aaKnown RBP20.43■□□□□ 0.86
LIG1-214ENST00000597146 R3HDMLQ9H3Y0 253 aa20.43■□□□□ 0.86
LIG1-214ENST00000597146 AIMP1Q12904 312 aaKnown RBP20.42■□□□□ 0.86
LIG1-214ENST00000597146 HSP90AB3PQ58FF7 597 aa20.42■□□□□ 0.86
LIG1-214ENST00000597146 CEP290O15078 2479 aa20.42■□□□□ 0.86
LIG1-214ENST00000597146 ZNF646O15015 1829 aaPredicted RBP20.41■□□□□ 0.86
LIG1-214ENST00000597146 FKTNO75072 461 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 PPP2R1AP30153 589 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 ZNF280AP59817 542 aaPredicted RBP20.41■□□□□ 0.86
LIG1-214ENST00000597146 NOM1Q5C9Z4 860 aaKnown RBP20.41■□□□□ 0.86
LIG1-214ENST00000597146 PRAMEF18Q5VWM3 479 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 COPS6Q7L5N1 327 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 TBC1D16Q8TBP0 767 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 XAGE3Q8WTP9 111 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 EYA3Q99504 573 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 ZNF609O15014 1411 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 SZT2Q5T011 3432 aa20.41■□□□□ 0.86
LIG1-214ENST00000597146 TM4SF4P48230 202 aa20.4■□□□□ 0.86
LIG1-214ENST00000597146 TCIRG1Q13488 830 aa20.4■□□□□ 0.86
LIG1-214ENST00000597146 NECTIN2Q92692 538 aa20.4■□□□□ 0.86
LIG1-214ENST00000597146 TRIOBPQ9H2D6 2365 aa20.4■□□□□ 0.86
LIG1-214ENST00000597146 PITPNM2Q9BZ72 1349 aa20.38■□□□□ 0.85
LIG1-214ENST00000597146 TTLL12Q14166 644 aaPredicted RBP20.38■□□□□ 0.85
LIG1-214ENST00000597146 RSBN1LQ6PCB5 846 aaPredicted RBP20.38■□□□□ 0.85
LIG1-214ENST00000597146 TSPYL4Q9UJ04 414 aa20.38■□□□□ 0.85
LIG1-214ENST00000597146 LAMB1P07942 1786 aa20.37■□□□□ 0.85
LIG1-214ENST00000597146 MYOZ2Q9NPC6 264 aa20.37■□□□□ 0.85
LIG1-214ENST00000597146 SF3B3Q15393 1217 aaKnown RBP20.36■□□□□ 0.85
LIG1-214ENST00000597146 AGBL3Q8NEM8 1001 aa20.36■□□□□ 0.85
LIG1-214ENST00000597146 FAM89AQ96GI7 184 aa20.36■□□□□ 0.85
LIG1-214ENST00000597146 ZC3H12CQ9C0D7 883 aaKnown RBP20.36■□□□□ 0.85
LIG1-214ENST00000597146 TRIM17Q9Y577 477 aa20.36■□□□□ 0.85
LIG1-214ENST00000597146 G3V3G9 751 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 UFL1O94874 794 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 SREBF2Q12772 1141 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 NFE2L2Q16236 605 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 DCAF8Q5TAQ9 597 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 CFHR5Q9BXR6 569 aa20.35■□□□□ 0.85
LIG1-214ENST00000597146 NEFMP07197 916 aa20.34■□□□□ 0.85
LIG1-214ENST00000597146 USP17L8P0C7I0 530 aa20.34■□□□□ 0.85
LIG1-214ENST00000597146 RTL5Q5HYW3 569 aaPredicted RBP20.34■□□□□ 0.85
LIG1-214ENST00000597146 GMLQ99445 158 aa20.34■□□□□ 0.85
LIG1-214ENST00000597146 SPEF2Q9C093 1822 aa20.34■□□□□ 0.85
LIG1-214ENST00000597146 NBPF9Q3BBW0 867 aa20.33■□□□□ 0.85
LIG1-214ENST00000597146 OTOP1Q7RTM1 612 aa20.33■□□□□ 0.85
LIG1-214ENST00000597146 PLEKHF1Q96S99 279 aa20.33■□□□□ 0.85
LIG1-214ENST00000597146 PODXL2Q9NZ53 605 aa20.32■□□□□ 0.84
LIG1-214ENST00000597146 COLQQ9Y215 455 aaPredicted RBP20.32■□□□□ 0.84
LIG1-214ENST00000597146 ATP5J2-PTCD1G3V325 749 aa20.31■□□□□ 0.84
LIG1-214ENST00000597146 EN2P19622 333 aaPredicted RBP20.31■□□□□ 0.84
LIG1-214ENST00000597146 RPS8P62241 208 aaKnown RBP20.31■□□□□ 0.84
LIG1-214ENST00000597146 PTPN12Q05209 780 aaKnown RBP20.31■□□□□ 0.84
LIG1-214ENST00000597146 PRKG1Q13976 671 aa20.31■□□□□ 0.84
LIG1-214ENST00000597146 INTS3Q68E01 1043 aaKnown RBP20.31■□□□□ 0.84
LIG1-214ENST00000597146 ANKIB1Q9P2G1 1089 aa20.31■□□□□ 0.84
LIG1-214ENST00000597146 SEC31BQ9NQW1 1179 aa20.3■□□□□ 0.84
LIG1-214ENST00000597146 GGA1Q9UJY5 639 aa20.3■□□□□ 0.84
LIG1-214ENST00000597146 ISCA1Q9BUE6 129 aa20.29■□□□□ 0.84
LIG1-214ENST00000597146 MXD3Q9BW11 206 aa20.29■□□□□ 0.84
LIG1-214ENST00000597146 IRS4O14654 1257 aaPredicted RBP20.28■□□□□ 0.84
LIG1-214ENST00000597146 NF2P35240 595 aa20.28■□□□□ 0.84
LIG1-214ENST00000597146 SPRYD7Q5W111 196 aa20.28■□□□□ 0.84
LIG1-214ENST00000597146 FZD1Q9UP38 647 aa20.28■□□□□ 0.84
LIG1-214ENST00000597146 USP17L3A6NCW0 530 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 USP17L4A6NCW7 530 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 SASH1O94885 1247 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 KRT24Q2M2I5 525 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 USP17L1Q7RTZ2 530 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 ZBTB4Q9P1Z0 1013 aaPredicted RBP20.27■□□□□ 0.84
LIG1-214ENST00000597146 CHPF2Q9P2E5 772 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 PTPN22Q9Y2R2 807 aa20.27■□□□□ 0.84
LIG1-214ENST00000597146 MAPK8IP3Q9UPT6 1336 aa20.27■□□□□ 0.83
LIG1-214ENST00000597146 ALDH1A1P00352 501 aa20.26■□□□□ 0.83
LIG1-214ENST00000597146 IFNL1Q8IU54 200 aa20.26■□□□□ 0.83
LIG1-214ENST00000597146 PLBD2Q8NHP8 589 aa20.26■□□□□ 0.83
LIG1-214ENST00000597146 CD99L2Q8TCZ2 262 aa20.26■□□□□ 0.83
LIG1-214ENST00000597146 RANBP2P49792 3224 aaKnown RBP20.26■□□□□ 0.83
LIG1-214ENST00000597146 IGF2BP3O00425 579 aaKnown RBP eCLIP20.25■□□□□ 0.83
LIG1-214ENST00000597146 WNT10BO00744 389 aa20.25■□□□□ 0.83
LIG1-214ENST00000597146 ARMC9Q7Z3E5 817 aa20.25■□□□□ 0.83
LIG1-214ENST00000597146 ARMC5Q96C12 935 aa20.25■□□□□ 0.83
LIG1-214ENST00000597146 ANGEL1Q9UNK9 670 aaKnown RBP20.25■□□□□ 0.83
LIG1-214ENST00000597146 ECM29Q5VYK3 1845 aa20.25■□□□□ 0.83
LIG1-214ENST00000597146 CAP1Q01518 475 aa20.24■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms