RNA–Protein interactions for RNA: ENST00000596624.1

PNKP-208, Transcript of polynucleotide kinase 3'-phosphatase, human

TSL 4

Gene PNKP, Length 548 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PNKP-208	ENST00000596624	ECE2	O60344	883 aa		13.71	□□□□□ -0.21
PNKP-208	ENST00000596624	CCDC27	Q2M243	656 aa		13.71	□□□□□ -0.21
PNKP-208	ENST00000596624	SEC31B	Q9NQW1	1179 aa		13.71	□□□□□ -0.21
PNKP-208	ENST00000596624	KCNQ5	Q9NR82	932 aa		13.71	□□□□□ -0.21
PNKP-208	ENST00000596624	C6orf229	H3BNL8	230 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	AOC2	O75106	756 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	EGFR	P00533	1210 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	ZNF280A	P59817	542 aa	Predicted RBP	13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	CCDC152	Q4G0S7	254 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	CCDC30	Q5VVM6	783 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	SAMD7	Q7Z3H4	446 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	ZNF428	Q96B54	188 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	ABHD8	Q96I13	439 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	GML	Q99445	158 aa		13.7	□□□□□ -0.22
PNKP-208	ENST00000596624	FAM155A	B1AL88	458 aa	Predicted RBP	13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	NOG	Q13253	232 aa		13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	RTL5	Q5HYW3	569 aa	Predicted RBP	13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	USP48	Q86UV5	1035 aa		13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	AGBL3	Q8NEM8	1001 aa		13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	MYD88	Q99836	296 aa		13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	BEGAIN	Q9BUH8	593 aa		13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	CWC25	Q9NXE8	425 aa	Predicted RBP	13.69	□□□□□ -0.22
PNKP-208	ENST00000596624	ELL2	O00472	640 aa	Predicted RBP	13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	RIMBP2	O15034	1052 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	DDX58	O95786	925 aa	Known RBP	13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	IGKV5-2	P06315	115 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	RGS19	P49795	217 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	DOK7	Q18PE1	504 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	KSR2	Q6VAB6	950 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	TSPYL6	Q8N831	410 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	GGA1	Q9UJY5	639 aa		13.68	□□□□□ -0.22
PNKP-208	ENST00000596624	XDH	P47989	1333 aa		13.67	□□□□□ -0.22
PNKP-208	ENST00000596624	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.67	□□□□□ -0.22
PNKP-208	ENST00000596624	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	13.67	□□□□□ -0.22
PNKP-208	ENST00000596624	KRT26	Q7Z3Y9	468 aa		13.67	□□□□□ -0.22
PNKP-208	ENST00000596624	TTLL11	Q8NHH1	800 aa		13.67	□□□□□ -0.22
PNKP-208	ENST00000596624	MYH3	P11055	1940 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	CACNA1F	O60840	1977 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	UFL1	O94874	794 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	ATP2B4	P23634	1241 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	KIF4B	Q2VIQ3	1234 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	RSBN1L	Q6PCB5	846 aa	Predicted RBP	13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	DLK2	Q6UY11	383 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	PODN	Q7Z5L7	613 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	ZIC5	Q96T25	663 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	GBA2	Q9HCG7	927 aa	Predicted RBP	13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	BSDC1	Q9NW68	430 aa	Predicted RBP	13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	MAP3K2	Q9Y2U5	619 aa		13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	ZNF646	O15015	1829 aa	Predicted RBP	13.66	□□□□□ -0.22
PNKP-208	ENST00000596624	IL16	Q14005	1332 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	CASP8AP2	Q9UKL3	1982 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	PI4KAP2	A4QPH2	592 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624		H7C1W4	665 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	CTSW	P56202	376 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	HUNK	P57058	714 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	RGMB	Q6NW40	437 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	ANKRD18A	Q8IVF6	992 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	WWC1	Q8IX03	1113 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	PI4KAP1	Q8N8J0	262 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	DCPS	Q96C86	337 aa	Known RBP	13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	PLA2G12B	Q9BX93	195 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	ANKIB1	Q9P2G1	1089 aa		13.65	□□□□□ -0.22
PNKP-208	ENST00000596624	PITPNM2	Q9BZ72	1349 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	MED23	Q9ULK4	1368 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	C2orf69	Q8N8R5	385 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	CCDC102A	Q96A19	550 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	CDC5L	Q99459	802 aa	Known RBP	13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	ZNF408	Q9H9D4	720 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	SAGE1	Q9NXZ1	904 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	MINPP1	Q9UNW1	487 aa		13.64	□□□□□ -0.23
PNKP-208	ENST00000596624	NEURL1B	A8MQ27	555 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	ADM5	C9JUS6	153 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	MMP14	P50281	582 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	CASP7	P55210	303 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	FKBP1B	P68106	108 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	GRM1	Q13255	1194 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	CCDC184	Q52MB2	194 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	JARID2	Q92833	1246 aa	Predicted RBP	13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	GGA3	Q9NZ52	723 aa		13.63	□□□□□ -0.23
PNKP-208	ENST00000596624	USP17L3	A6NCW0	530 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	USP17L4	A6NCW7	530 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	CSF1R	P07333	972 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	SLC10A3	P09131	477 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	USP17L8	P0C7I0	530 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	USP17L1	Q7RTZ2	530 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	SULF1	Q8IWU6	871 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	TSKS	Q9UJT2	592 aa		13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	ASTN2	O75129	1339 aa	Predicted RBP	13.62	□□□□□ -0.23
PNKP-208	ENST00000596624	WTIP	A6NIX2	430 aa	Predicted RBP	13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	NEXN	Q0ZGT2	675 aa		13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	SCARF1	Q14162	830 aa		13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	TWISTNB	Q3B726	338 aa	Predicted RBP	13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	DACT2	Q5SW24	774 aa		13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	RBM26	Q5T8P6	1007 aa	Known RBP	13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	G2E3	Q7L622	706 aa		13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	REM2	Q8IYK8	340 aa	Predicted RBP	13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	TSR2	Q969E8	191 aa	Known RBP	13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	CDCA5	Q96FF9	252 aa		13.61	□□□□□ -0.23
PNKP-208	ENST00000596624	GREM2	Q9H772	168 aa		13.61	□□□□□ -0.23

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