RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 FER1L6Q2WGJ9 1857 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 COL4A5P29400 1685 aa13.24□□□□□ -0.29
LIG1-210ENST00000596332 LTBP3Q9NS15 1303 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 RASSF7Q02833 373 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 CCDC57Q2TAC2 916 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 TMC4Q7Z404 712 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 VGLL2Q8N8G2 317 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 CDC5LQ99459 802 aaKnown RBP13.23□□□□□ -0.29
LIG1-210ENST00000596332 CHMP3Q9Y3E7 222 aa13.23□□□□□ -0.29
LIG1-210ENST00000596332 SRGAP3O43295 1099 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 IRX6P78412 446 aaPredicted RBP13.22□□□□□ -0.29
LIG1-210ENST00000596332 CHRNDQ07001 517 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 CCDC93Q567U6 631 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 CC2D2BQ6DHV5 1058 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 LDHAL6AQ6ZMR3 332 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 ARHGAP27Q6ZUM4 889 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 PELP1Q8IZL8 1130 aaKnown RBP13.22□□□□□ -0.29
LIG1-210ENST00000596332 HELBQ8NG08 1087 aaPredicted RBP13.22□□□□□ -0.29
LIG1-210ENST00000596332 PSMD1Q99460 953 aa13.22□□□□□ -0.29
LIG1-210ENST00000596332 NOP58Q9Y2X3 529 aaKnown RBP13.22□□□□□ -0.29
LIG1-210ENST00000596332 EYA2O00167 538 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 GRIN3BO60391 1043 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 FKBP4Q02790 459 aaKnown RBP eCLIP13.21□□□□□ -0.29
LIG1-210ENST00000596332 TXNRD3Q86VQ6 643 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 RPAP2Q8IXW5 612 aaPredicted RBP13.21□□□□□ -0.29
LIG1-210ENST00000596332 MPNDQ8N594 471 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 TBC1D16Q8TBP0 767 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 GPR101Q96P66 508 aaPredicted RBP13.21□□□□□ -0.29
LIG1-210ENST00000596332 HDAC5Q9UQL6 1122 aa13.21□□□□□ -0.29
LIG1-210ENST00000596332 TAF5LO75529 589 aa13.2□□□□□ -0.3
LIG1-210ENST00000596332 CIAO1O76071 339 aa13.2□□□□□ -0.3
LIG1-210ENST00000596332 SASH1O94885 1247 aa13.2□□□□□ -0.3
LIG1-210ENST00000596332 IGHMBP2P38935 993 aaKnown RBP13.2□□□□□ -0.3
LIG1-210ENST00000596332 RTKN2Q8IZC4 609 aa13.2□□□□□ -0.3
LIG1-210ENST00000596332 SPEF2Q9C093 1822 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 FGFR2P21802 821 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 KLRK1P26718 216 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 SOGA3Q5TF21 947 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 ZNF277Q9NRM2 450 aaPredicted RBP13.19□□□□□ -0.3
LIG1-210ENST00000596332 FBXO3Q9UK99 471 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 NSFL1CQ9UNZ2 370 aaKnown RBP13.19□□□□□ -0.3
LIG1-210ENST00000596332 A0A1B0GUL6 1792 aa13.19□□□□□ -0.3
LIG1-210ENST00000596332 XDHP47989 1333 aa13.18□□□□□ -0.3
LIG1-210ENST00000596332 GRIPAP1Q4V328 841 aa13.18□□□□□ -0.3
LIG1-210ENST00000596332 DPP8Q6V1X1 898 aaPredicted RBP13.18□□□□□ -0.3
LIG1-210ENST00000596332 MPHOSPH8Q99549 860 aa13.18□□□□□ -0.3
LIG1-210ENST00000596332 SIL1Q9H173 461 aa13.18□□□□□ -0.3
LIG1-210ENST00000596332 SBF1O95248 1867 aa13.18□□□□□ -0.3
LIG1-210ENST00000596332 PDE8BO95263 885 aa13.17□□□□□ -0.3
LIG1-210ENST00000596332 KIAA2012Q0VF49 1180 aa13.17□□□□□ -0.3
LIG1-210ENST00000596332 C15orf52Q6ZUT6 534 aaKnown RBP13.17□□□□□ -0.3
LIG1-210ENST00000596332 TAOK3Q9H2K8 898 aa13.17□□□□□ -0.3
LIG1-210ENST00000596332 CHMP4BQ9H444 224 aaKnown RBP13.17□□□□□ -0.3
LIG1-210ENST00000596332 CNNM1Q9NRU3 951 aa13.17□□□□□ -0.3
LIG1-210ENST00000596332 MROH5Q6ZUA9 1318 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 IGHDP01880 384 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 LMNB1P20700 586 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 IARSP41252 1262 aaKnown RBP13.16□□□□□ -0.3
LIG1-210ENST00000596332 TFCP2Q12800 502 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 C9orf131Q5VYM1 1079 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 ANKRD2Q9GZV1 360 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 DCTPP1Q9H773 170 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 KCNQ5Q9NR82 932 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 LEMD3Q9Y2U8 911 aa13.16□□□□□ -0.3
LIG1-210ENST00000596332 ZNF804BA4D1E1 1349 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 YDJCA8MPS7 323 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 ATP2B4P23634 1241 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 IL15P40933 162 aaPredicted RBP13.15□□□□□ -0.3
LIG1-210ENST00000596332 AOC3Q16853 763 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 TAF7LQ5H9L4 462 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 VPS33BQ9H267 617 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 ANKIB1Q9P2G1 1089 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 GGA1Q9UJY5 639 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 EXOC6BQ9Y2D4 811 aa13.15□□□□□ -0.3
LIG1-210ENST00000596332 FZD9O00144 591 aa13.14□□□□□ -0.31
LIG1-210ENST00000596332 SURF6O75683 361 aaKnown RBP13.14□□□□□ -0.31
LIG1-210ENST00000596332 UFL1O94874 794 aa13.14□□□□□ -0.31
LIG1-210ENST00000596332 AAMPQ13685 434 aa13.14□□□□□ -0.31
LIG1-210ENST00000596332 UBE4AQ14139 1066 aa13.14□□□□□ -0.31
LIG1-210ENST00000596332 WASHC4Q2M389 1173 aa13.14□□□□□ -0.31
LIG1-210ENST00000596332 FAM84BQ96KN1 310 aaPredicted RBP13.14□□□□□ -0.31
LIG1-210ENST00000596332 MED23Q9ULK4 1368 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 C6orf229H3BNL8 230 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 RIMBP2O15034 1052 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 TIMM10P62072 90 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 HDAC1Q13547 482 aaPredicted RBP13.13□□□□□ -0.31
LIG1-210ENST00000596332 METTL24Q5JXM2 366 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 FBXO33Q7Z6M2 555 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 RNF181Q9P0P0 153 aa13.13□□□□□ -0.31
LIG1-210ENST00000596332 CENPBP07199 599 aaPredicted RBP13.12□□□□□ -0.31
LIG1-210ENST00000596332 DOK7Q18PE1 504 aa13.12□□□□□ -0.31
LIG1-210ENST00000596332 SUPT20HQ8NEM7 779 aa13.12□□□□□ -0.31
LIG1-210ENST00000596332 EAF2Q96CJ1 260 aaPredicted RBP13.12□□□□□ -0.31
LIG1-210ENST00000596332 CEP126Q9P2H0 1117 aa13.12□□□□□ -0.31
LIG1-210ENST00000596332 CCDC88AQ3V6T2 1871 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 PPIP5K2O43314 1243 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 ADORA1P30542 326 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 GYG1P46976 350 aa13.11□□□□□ -0.31
LIG1-210ENST00000596332 G3BP1Q13283 466 aaKnown RBP eCLIP13.11□□□□□ -0.314e-6■■■■□ 21.1
LIG1-210ENST00000596332 RHPN1Q8TCX5 695 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 9 ms