RNA–Protein interactions for RNA: ENST00000596104.5

LIG1-209, Transcript of DNA ligase 1, humanhuman

TSL 3

Gene LIG1, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-209ENST00000596104 RGMBQ6NW40 437 aa12.98□□□□□ -0.33
LIG1-209ENST00000596104 CFAP44Q96MT7 982 aa12.98□□□□□ -0.33
LIG1-209ENST00000596104 EYA3Q99504 573 aa12.98□□□□□ -0.33
LIG1-209ENST00000596104 GBA2Q9HCG7 927 aaPredicted RBP12.98□□□□□ -0.33
LIG1-209ENST00000596104 PODXL2Q9NZ53 605 aa12.98□□□□□ -0.33
LIG1-209ENST00000596104 DDX60Q8IY21 1712 aaKnown RBP12.98□□□□□ -0.33
LIG1-209ENST00000596104 RBM26Q5T8P6 1007 aaKnown RBP12.97□□□□□ -0.33
LIG1-209ENST00000596104 SEC31BQ9NQW1 1179 aa12.97□□□□□ -0.33
LIG1-209ENST00000596104 MBIPQ9NS73 344 aa12.97□□□□□ -0.33
LIG1-209ENST00000596104 TAF1P21675 1872 aa12.97□□□□□ -0.33
LIG1-209ENST00000596104 ASTN2O75129 1339 aaPredicted RBP12.96□□□□□ -0.33
LIG1-209ENST00000596104 ZNF853P0CG23 659 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 DGKZQ13574 1117 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 KIF4BQ2VIQ3 1234 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 C2orf69Q8N8R5 385 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 ZBTB38Q8NAP3 1195 aaPredicted RBP12.96□□□□□ -0.33
LIG1-209ENST00000596104 DCPSQ96C86 337 aaKnown RBP12.96□□□□□ -0.33
LIG1-209ENST00000596104 ZC3H12CQ9C0D7 883 aaKnown RBP12.96□□□□□ -0.33
LIG1-209ENST00000596104 GGA3Q9NZ52 723 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 ADAMTS8Q9UP79 889 aa12.96□□□□□ -0.33
LIG1-209ENST00000596104 ZNF609O15014 1411 aa12.96□□□□□ -0.34
LIG1-209ENST00000596104 UFL1O94874 794 aa12.95□□□□□ -0.34
LIG1-209ENST00000596104 ZNF280AP59817 542 aaPredicted RBP12.95□□□□□ -0.34
LIG1-209ENST00000596104 KIF23Q02241 960 aaPredicted RBP12.95□□□□□ -0.34
LIG1-209ENST00000596104 WDR43Q15061 677 aaKnown RBP eCLIP12.95□□□□□ -0.34
LIG1-209ENST00000596104 RIC3Q7Z5B4 369 aa12.95□□□□□ -0.34
LIG1-209ENST00000596104 CCDC102AQ96A19 550 aa12.95□□□□□ -0.34
LIG1-209ENST00000596104 PHAXQ9H814 394 aaKnown RBP12.95□□□□□ -0.34
LIG1-209ENST00000596104 SAGE1Q9NXZ1 904 aa12.95□□□□□ -0.34
LIG1-209ENST00000596104 SLC10A3P09131 477 aa12.94□□□□□ -0.34
LIG1-209ENST00000596104 GOLGA2Q08379 1002 aa12.94□□□□□ -0.34
LIG1-209ENST00000596104 SULF1Q8IWU6 871 aa12.94□□□□□ -0.34
LIG1-209ENST00000596104 CDCA5Q96FF9 252 aa12.94□□□□□ -0.34
LIG1-209ENST00000596104 GGA1Q9UJY5 639 aa12.94□□□□□ -0.34
LIG1-209ENST00000596104 PCCAP05165 728 aaPredicted RBP12.93□□□□□ -0.34
LIG1-209ENST00000596104 HSP90B1P14625 803 aaKnown RBP12.93□□□□□ -0.34
LIG1-209ENST00000596104 ZNF157P51786 506 aaPredicted RBP12.93□□□□□ -0.34
LIG1-209ENST00000596104 DDX10Q13206 875 aaKnown RBP12.93□□□□□ -0.34
LIG1-209ENST00000596104 RSBN1LQ6PCB5 846 aaPredicted RBP12.93□□□□□ -0.34
LIG1-209ENST00000596104 CCDC191Q8NCU4 936 aa12.93□□□□□ -0.34
LIG1-209ENST00000596104 AGBL3Q8NEM8 1001 aa12.93□□□□□ -0.34
LIG1-209ENST00000596104 GMLQ99445 158 aa12.93□□□□□ -0.34
LIG1-209ENST00000596104 MYD88Q99836 296 aa12.93□□□□□ -0.34
LIG1-209ENST00000596104 PDE8AO60658 829 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 CCDC152Q4G0S7 254 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 CSRNP1Q96S65 589 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 IFT57Q9NWB7 429 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 RNF186Q9NXI6 227 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 ANKIB1Q9P2G1 1089 aa12.92□□□□□ -0.34
LIG1-209ENST00000596104 ELL2O00472 640 aaPredicted RBP12.91□□□□□ -0.34
LIG1-209ENST00000596104 TRPA1O75762 1119 aa12.91□□□□□ -0.34
LIG1-209ENST00000596104 SCARF1Q14162 830 aa12.91□□□□□ -0.34
LIG1-209ENST00000596104 ANGEL2Q5VTE6 544 aaKnown RBP12.91□□□□□ -0.34
LIG1-209ENST00000596104 RASAL3Q86YV0 1011 aa12.91□□□□□ -0.34
LIG1-209ENST00000596104 JARID2Q92833 1246 aaPredicted RBP12.91□□□□□ -0.34
LIG1-209ENST00000596104 CCDC85AQ96PX6 553 aaPredicted RBP12.91□□□□□ -0.34
LIG1-209ENST00000596104 CWC25Q9NXE8 425 aaPredicted RBP12.91□□□□□ -0.34
LIG1-209ENST00000596104 SCN9AQ15858 1988 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 CASP8AP2Q9UKL3 1982 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 XDHP47989 1333 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 G3V3G9 751 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 APAF1O14727 1248 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 DCAF8Q5TAQ9 597 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 C8orf58Q8NAV2 365 aa12.9□□□□□ -0.34
LIG1-209ENST00000596104 METTL22Q9BUU2 404 aaPredicted RBP12.9□□□□□ -0.34
LIG1-209ENST00000596104 PITPNM2Q9BZ72 1349 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 WTIPA6NIX2 430 aaPredicted RBP12.89□□□□□ -0.35
LIG1-209ENST00000596104 USP17L8P0C7I0 530 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 ATP2B4P23634 1241 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 GNAI1P63096 354 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 FKBP1BP68106 108 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 PODNQ7Z5L7 613 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 ANKRD18AQ8IVF6 992 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 MYOZ2Q9NPC6 264 aa12.89□□□□□ -0.35
LIG1-209ENST00000596104 USP17L3A6NCW0 530 aa12.88□□□□□ -0.35
LIG1-209ENST00000596104 USP17L4A6NCW7 530 aa12.88□□□□□ -0.35
LIG1-209ENST00000596104 IGKV5-2P06315 115 aa12.88□□□□□ -0.35
LIG1-209ENST00000596104 CTSWP56202 376 aa12.88□□□□□ -0.35
LIG1-209ENST00000596104 CALD1Q05682 793 aaKnown RBP12.88□□□□□ -0.35
LIG1-209ENST00000596104 USP17L1Q7RTZ2 530 aa12.88□□□□□ -0.35
LIG1-209ENST00000596104 MED23Q9ULK4 1368 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 DDX58O95786 925 aaKnown RBP12.87□□□□□ -0.35
LIG1-209ENST00000596104 CCDC30Q5VVM6 783 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 MOB2Q70IA6 237 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 REM2Q8IYK8 340 aaPredicted RBP12.87□□□□□ -0.35
LIG1-209ENST00000596104 TTLL11Q8NHH1 800 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 CDC5LQ99459 802 aaKnown RBP12.87□□□□□ -0.35
LIG1-209ENST00000596104 PRKRIP1Q9H875 184 aaPredicted RBP12.87□□□□□ -0.35
LIG1-209ENST00000596104 MINPP1Q9UNW1 487 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 SCAF8Q9UPN6 1271 aaKnown RBP12.87□□□□□ -0.35
LIG1-209ENST00000596104 MAP3K2Q9Y2U5 619 aa12.87□□□□□ -0.35
LIG1-209ENST00000596104 SOX10P56693 466 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 NBPF9Q3BBW0 867 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 DACT2Q5SW24 774 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 CTU1Q7Z7A3 348 aaKnown RBP12.86□□□□□ -0.35
LIG1-209ENST00000596104 TSPYL6Q8N831 410 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 GREM2Q9H772 168 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 BSDC1Q9NW68 430 aaPredicted RBP12.86□□□□□ -0.35
LIG1-209ENST00000596104 PAPPA2Q9BXP8 1791 aa12.86□□□□□ -0.35
LIG1-209ENST00000596104 PI4KAP2A4QPH2 592 aa12.85□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms