RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 MAP2K1Q02750 393 aaPredicted RBP19.21■□□□□ 0.67
TRIM28-205ENST00000595028 KIAA2012Q0VF49 1180 aa19.21■□□□□ 0.67
TRIM28-205ENST00000595028 DEFB115Q30KQ5 88 aa19.21■□□□□ 0.67
TRIM28-205ENST00000595028 TRMT2AQ8IZ69 625 aaKnown RBP19.21■□□□□ 0.67
TRIM28-205ENST00000595028 TTLL11Q8NHH1 800 aa19.21■□□□□ 0.67
TRIM28-205ENST00000595028 ADAMTSL1Q8N6G6 1762 aa19.2■□□□□ 0.66
TRIM28-205ENST00000595028 GPSM2P81274 684 aa19.2■□□□□ 0.66
TRIM28-205ENST00000595028 EAPPQ56P03 285 aaPredicted RBP19.2■□□□□ 0.66
TRIM28-205ENST00000595028 MRPL50Q8N5N7 158 aaKnown RBP19.2■□□□□ 0.66
TRIM28-205ENST00000595028 NSFL1CQ9UNZ2 370 aaKnown RBP19.2■□□□□ 0.66
TRIM28-205ENST00000595028 WDR33Q9C0J8 1336 aaKnown RBP19.2■□□□□ 0.66
TRIM28-205ENST00000595028 SSH1Q8WYL5 1049 aa19.19■□□□□ 0.66
TRIM28-205ENST00000595028 CDC5LQ99459 802 aaKnown RBP19.19■□□□□ 0.66
TRIM28-205ENST00000595028 GREM2Q9H772 168 aa19.19■□□□□ 0.66
TRIM28-205ENST00000595028 ANKRD18AQ8IVF6 992 aa19.18■□□□□ 0.66
TRIM28-205ENST00000595028 HACL1Q9UJ83 578 aa19.18■□□□□ 0.66
TRIM28-205ENST00000595028 ZNRF3Q9ULT6 936 aa19.18■□□□□ 0.66
TRIM28-205ENST00000595028 CLEC11AQ9Y240 323 aa19.18■□□□□ 0.66
TRIM28-205ENST00000595028 PODXL2Q9NZ53 605 aa19.17■□□□□ 0.66
TRIM28-205ENST00000595028 POLLQ9UGP5 575 aa19.17■□□□□ 0.66
TRIM28-205ENST00000595028 GJA3Q9Y6H8 435 aa19.17■□□□□ 0.66
TRIM28-205ENST00000595028 PTPRCP08575 1304 aa19.17■□□□□ 0.66
TRIM28-205ENST00000595028 ALDH1L1O75891 902 aa19.16■□□□□ 0.66
TRIM28-205ENST00000595028 CT47B1P0C2W7 299 aaPredicted RBP19.16■□□□□ 0.66
TRIM28-205ENST00000595028 ALDH1L2Q3SY69 923 aa19.16■□□□□ 0.66
TRIM28-205ENST00000595028 TBC1D16Q8TBP0 767 aa19.16■□□□□ 0.66
TRIM28-205ENST00000595028 BCL2L13Q9BXK5 485 aa19.16■□□□□ 0.66
TRIM28-205ENST00000595028 A0A1B0GUL6 1792 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 C6orf229H3BNL8 230 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 GRM8O00222 908 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 WASHC4Q2M389 1173 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 SLC4A10Q6U841 1118 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 EYA3Q99504 573 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 SRCIN1Q9C0H9 1055 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 ANKIB1Q9P2G1 1089 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 ABT1Q9ULW3 272 aaKnown RBP19.15■□□□□ 0.66
TRIM28-205ENST00000595028 XDHP47989 1333 aa19.15■□□□□ 0.66
TRIM28-205ENST00000595028 THSD7BQ9C0I4 1608 aa19.14■□□□□ 0.66
TRIM28-205ENST00000595028 SCN9AQ15858 1988 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 UFL1O94874 794 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 CSF1RP07333 972 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 EPHX2P34913 555 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 SCNN1DP51172 638 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 CXCL9Q07325 125 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 MAP1SQ66K74 1059 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-205ENST00000595028 CNTROBQ8N137 903 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 GPR101Q96P66 508 aaPredicted RBP19.14■□□□□ 0.65
TRIM28-205ENST00000595028 SMC4Q9NTJ3 1288 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 GGA1Q9UJY5 639 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 PSME4Q14997 1843 aa19.14■□□□□ 0.65
TRIM28-205ENST00000595028 YDJCA8MPS7 323 aa19.13■□□□□ 0.65
TRIM28-205ENST00000595028 ITGA6P23229 1130 aa19.13■□□□□ 0.65
TRIM28-205ENST00000595028 LMOD1P29536 600 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-205ENST00000595028 CIAPIN1Q6FI81 312 aa19.13■□□□□ 0.65
TRIM28-205ENST00000595028 BSDC1Q9NW68 430 aaPredicted RBP19.13■□□□□ 0.65
TRIM28-205ENST00000595028 RIMBP2O15034 1052 aa19.12■□□□□ 0.65
TRIM28-205ENST00000595028 IGHMBP2P38935 993 aaKnown RBP19.12■□□□□ 0.65
TRIM28-205ENST00000595028 FOXO4P98177 505 aa19.12■□□□□ 0.65
TRIM28-205ENST00000595028 DBNDD1Q9H9R9 158 aa19.12■□□□□ 0.65
TRIM28-205ENST00000595028 C9orf78Q9NZ63 289 aaPredicted RBP19.12■□□□□ 0.65
TRIM28-205ENST00000595028 PDE4DIPQ5VU43 2346 aa19.12■□□□□ 0.65
TRIM28-205ENST00000595028 RAD17O75943 681 aa19.11■□□□□ 0.65
TRIM28-205ENST00000595028 PNMA8AQ86V59 439 aaPredicted RBP19.11■□□□□ 0.65
TRIM28-205ENST00000595028 BEGAINQ9BUH8 593 aa19.11■□□□□ 0.65
TRIM28-205ENST00000595028 ECE2O60344 883 aa19.1■□□□□ 0.65
TRIM28-205ENST00000595028 TNIP1Q15025 636 aa19.1■□□□□ 0.65
TRIM28-205ENST00000595028 EPHA10Q5JZY3 1008 aa19.1■□□□□ 0.65
TRIM28-205ENST00000595028 MINPP1Q9UNW1 487 aa19.1■□□□□ 0.65
TRIM28-205ENST00000595028 MED23Q9ULK4 1368 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 UTYO14607 1347 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 ANKRD18BA2A2Z9 1011 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 ATP2B4P23634 1241 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 EPS15P42566 896 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 GMPSP49915 693 aaPredicted RBP19.09■□□□□ 0.65
TRIM28-205ENST00000595028 HNRNPUQ00839 825 aaKnown RBP eCLIP19.09■□□□□ 0.65
TRIM28-205ENST00000595028 CAPNS2Q96L46 248 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 ZC3H12CQ9C0D7 883 aaKnown RBP19.09■□□□□ 0.65
TRIM28-205ENST00000595028 GPRC5DQ9NZD1 345 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 TSKSQ9UJT2 592 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 CHMP3Q9Y3E7 222 aa19.09■□□□□ 0.65
TRIM28-205ENST00000595028 BRPF1P55201 1214 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-205ENST00000595028 IFIT5Q13325 482 aaKnown RBP19.08■□□□□ 0.64
TRIM28-205ENST00000595028 DOK7Q18PE1 504 aa19.08■□□□□ 0.64
TRIM28-205ENST00000595028 LMBR1LQ6UX01 489 aa19.08■□□□□ 0.64
TRIM28-205ENST00000595028 PAXIP1Q6ZW49 1069 aaPredicted RBP19.08■□□□□ 0.64
TRIM28-205ENST00000595028 MPHOSPH8Q99549 860 aa19.08■□□□□ 0.64
TRIM28-205ENST00000595028 NBPF7P0C2Y1 421 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-205ENST00000595028 GRM1Q13255 1194 aa19.07■□□□□ 0.64
TRIM28-205ENST00000595028 CYP4F22Q6NT55 531 aa19.07■□□□□ 0.64
TRIM28-205ENST00000595028 SUCLG2Q96I99 432 aa19.07■□□□□ 0.64
TRIM28-205ENST00000595028 MCOLN1Q9GZU1 580 aa19.07■□□□□ 0.64
TRIM28-205ENST00000595028 ZNF646O15015 1829 aaPredicted RBP19.07■□□□□ 0.64
TRIM28-205ENST00000595028 PSMD14O00487 310 aa19.06■□□□□ 0.64
TRIM28-205ENST00000595028 ECE1P42892 770 aa19.06■□□□□ 0.64
TRIM28-205ENST00000595028 CCT4P50991 539 aaKnown RBP19.06■□□□□ 0.64
TRIM28-205ENST00000595028 FMR1Q06787 632 aaKnown RBP eCLIP19.06■□□□□ 0.641e-12■■■□□ 14.8
TRIM28-205ENST00000595028 USP50Q70EL3 339 aaPredicted RBP19.06■□□□□ 0.64
TRIM28-205ENST00000595028 ADARB2Q9NS39 739 aaKnown RBP19.06■□□□□ 0.64
TRIM28-205ENST00000595028 ZNF609O15014 1411 aa19.06■□□□□ 0.64
TRIM28-205ENST00000595028 RARSP54136 660 aaKnown RBP19.05■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 10.1 ms