RNA–Protein interactions for RNA: ENST00000594399.1

USE1-204, Transcript of unconventional SNARE in the ER 1, humanhuman

TSL 2

Gene USE1, Length 613 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USE1-204ENST00000594399 IL15P40933 162 aaPredicted RBP13.42□□□□□ -0.26
USE1-204ENST00000594399 RPS8P62241 208 aaKnown RBP13.42□□□□□ -0.26
USE1-204ENST00000594399 ERC1Q8IUD2 1116 aa13.42□□□□□ -0.26
USE1-204ENST00000594399 SMC5Q8IY18 1101 aa13.42□□□□□ -0.26
USE1-204ENST00000594399 BRCA1P38398 1863 aaKnown RBP13.42□□□□□ -0.26
USE1-204ENST00000594399 PPEF1O14829 653 aaPredicted RBP13.41□□□□□ -0.26
USE1-204ENST00000594399 DPEP1P16444 411 aa13.41□□□□□ -0.26
USE1-204ENST00000594399 LRRC24Q50LG9 513 aa13.41□□□□□ -0.26
USE1-204ENST00000594399 TMC4Q7Z404 712 aa13.41□□□□□ -0.26
USE1-204ENST00000594399 CNKSR1Q969H4 720 aa13.41□□□□□ -0.26
USE1-204ENST00000594399 PUS3Q9BZE2 481 aaKnown RBP13.41□□□□□ -0.26
USE1-204ENST00000594399 BSDC1Q9NW68 430 aaPredicted RBP13.41□□□□□ -0.26
USE1-204ENST00000594399 GOLGB1Q14789 3259 aaKnown RBP13.41□□□□□ -0.26
USE1-204ENST00000594399 MROH5Q6ZUA9 1318 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 A0A0G2JLW4 131 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 APBB1O00213 710 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 BBOX1O75936 387 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 YBX3P16989 372 aaKnown RBP eCLIP13.4□□□□□ -0.26
USE1-204ENST00000594399 METTL24Q5JXM2 366 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 PRPF40BQ6NWY9 871 aaKnown RBP13.4□□□□□ -0.26
USE1-204ENST00000594399 ATG9AQ7Z3C6 839 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 KIF1BPQ96EK5 621 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 LRRCC1Q9C099 1032 aa13.4□□□□□ -0.26
USE1-204ENST00000594399 SASH1O94885 1247 aa13.39□□□□□ -0.27
USE1-204ENST00000594399 RHPN1Q8TCX5 695 aa13.39□□□□□ -0.27
USE1-204ENST00000594399 ZBTB47Q9UFB7 747 aaPredicted RBP13.39□□□□□ -0.27
USE1-204ENST00000594399 RIPOR2Q9Y4F9 1068 aa13.39□□□□□ -0.27
USE1-204ENST00000594399 SLX4Q8IY92 1834 aa13.39□□□□□ -0.27
USE1-204ENST00000594399 ZNF609O15014 1411 aa13.39□□□□□ -0.27
USE1-204ENST00000594399 KCNA3P22001 575 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 CHRNDQ07001 517 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 TFCP2Q12800 502 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 ANKRD45Q5TZF3 282 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 TTLL6Q8N841 843 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 PIM2Q9P1W9 311 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 CEP126Q9P2H0 1117 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 MINPP1Q9UNW1 487 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 LTBP1Q14766 1721 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 ARAP2Q8WZ64 1704 aa13.38□□□□□ -0.27
USE1-204ENST00000594399 NUCB1Q02818 461 aa13.37□□□□□ -0.27
USE1-204ENST00000594399 SP8Q8IXZ3 490 aa13.37□□□□□ -0.27
USE1-204ENST00000594399 ANKRD2Q9GZV1 360 aa13.37□□□□□ -0.27
USE1-204ENST00000594399 TMX4Q9H1E5 349 aaPredicted RBP13.37□□□□□ -0.27
USE1-204ENST00000594399 ATP6V0A2Q9Y487 856 aa13.37□□□□□ -0.27
USE1-204ENST00000594399 PDE8BO95263 885 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 DALRD3Q5D0E6 543 aaKnown RBP13.36□□□□□ -0.27
USE1-204ENST00000594399 SLC51AQ86UW1 340 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 CHD1LQ86WJ1 897 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 CLASRPQ8N2M8 674 aaKnown RBP13.36□□□□□ -0.27
USE1-204ENST00000594399 VGLL2Q8N8G2 317 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 IL1RAPL2Q9NP60 686 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 GPR108Q9NPR9 543 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 AKAP2Q9Y2D5 859 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 XDHP47989 1333 aa13.36□□□□□ -0.27
USE1-204ENST00000594399 SMARCA5O60264 1052 aaPredicted RBP13.35□□□□□ -0.27
USE1-204ENST00000594399 PUM3Q15397 648 aaKnown RBP13.35□□□□□ -0.27
USE1-204ENST00000594399 ATP2B3Q16720 1220 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 TNNI3KQ59H18 835 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 ZNF784Q8NCA9 323 aaPredicted RBP13.35□□□□□ -0.27
USE1-204ENST00000594399 HELBQ8NG08 1087 aaPredicted RBP13.35□□□□□ -0.27
USE1-204ENST00000594399 LNPKQ9C0E8 428 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 ANKIB1Q9P2G1 1089 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 FPGT-TNNI3KV9GXZ4 949 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 DUOX1Q9NRD9 1551 aa13.35□□□□□ -0.27
USE1-204ENST00000594399 ARFGEF1Q9Y6D6 1849 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 SNED1Q8TER0 1413 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 TAF5LO75529 589 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 KCNJ4P48050 445 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 GPSM2P81274 684 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 SOGA3Q5TF21 947 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 CC2D2BQ6DHV5 1058 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 AACSQ86V21 672 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 BCL11AQ9H165 835 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 PODXL2Q9NZ53 605 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 WWC3Q9ULE0 1092 aa13.34□□□□□ -0.27
USE1-204ENST00000594399 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.34□□□□□ -0.27
USE1-204ENST00000594399 C21orf2O43822 256 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 CCDC93Q567U6 631 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 MPNDQ8N594 471 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 C7orf43Q8WVR3 580 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 ZNF219Q9P2Y4 722 aaPredicted RBP13.33□□□□□ -0.28
USE1-204ENST00000594399 GGA1Q9UJY5 639 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 NSFL1CQ9UNZ2 370 aaKnown RBP13.33□□□□□ -0.28
USE1-204ENST00000594399 BCS1LQ9Y276 419 aa13.33□□□□□ -0.28
USE1-204ENST00000594399 A0A1B0GUL7 405 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 UFL1O94874 794 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 IFIT2P09913 472 aaKnown RBP13.32□□□□□ -0.28
USE1-204ENST00000594399 SLC5A1P13866 664 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 FGFR2P21802 821 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 ATP2B4P23634 1241 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 UBE4AQ14139 1066 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 GRIPAP1Q4V328 841 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 OLFM4Q6UX06 510 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 DPP8Q6V1X1 898 aaPredicted RBP13.32□□□□□ -0.28
USE1-204ENST00000594399 LPIN2Q92539 896 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 EAF2Q96CJ1 260 aaPredicted RBP13.32□□□□□ -0.28
USE1-204ENST00000594399 LEMD3Q9Y2U8 911 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 ZNF804BA4D1E1 1349 aa13.32□□□□□ -0.28
USE1-204ENST00000594399 IFIT1P09914 478 aaKnown RBP13.31□□□□□ -0.28
USE1-204ENST00000594399 TBC1D16Q8TBP0 767 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms