RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C6orf229H3BNL8 230 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 RABL6Q3YEC7 729 aaPredicted RBP18.32■□□□□ 0.52
VRK3-206ENST00000594090 TBC1D16Q8TBP0 767 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 MPHOSPH8Q99549 860 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 GGA1Q9UJY5 639 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 MINPP1Q9UNW1 487 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 XDHP47989 1333 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 DDNO94850 711 aaPredicted RBP18.32■□□□□ 0.52
VRK3-206ENST00000594090 UFL1O94874 794 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 CCDC57Q2TAC2 916 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 ZKSCAN2Q63HK3 967 aa18.32■□□□□ 0.52
VRK3-206ENST00000594090 EIF6P56537 245 aaKnown RBP18.31■□□□□ 0.52
VRK3-206ENST00000594090 WASHC4Q2M389 1173 aa18.31■□□□□ 0.52
VRK3-206ENST00000594090 ANKRD44Q8N8A2 993 aa18.31■□□□□ 0.52
VRK3-206ENST00000594090 CLUAP1Q96AJ1 413 aa18.31■□□□□ 0.52
VRK3-206ENST00000594090 GPR101Q96P66 508 aaPredicted RBP18.31■□□□□ 0.52
VRK3-206ENST00000594090 EYA3Q99504 573 aa18.31■□□□□ 0.52
VRK3-206ENST00000594090 RRAGCQ9HB90 399 aa18.31■□□□□ 0.52
VRK3-206ENST00000594090 UBTFL1P0CB47 393 aaPredicted RBP18.3■□□□□ 0.52
VRK3-206ENST00000594090 MEIS3Q99687 375 aa18.3■□□□□ 0.52
VRK3-206ENST00000594090 ATP2B4P23634 1241 aa18.29■□□□□ 0.52
VRK3-206ENST00000594090 TAF7LQ5H9L4 462 aa18.29■□□□□ 0.52
VRK3-206ENST00000594090 ZNF594Q96JF6 807 aaPredicted RBP18.29■□□□□ 0.52
VRK3-206ENST00000594090 ZNRF3Q9ULT6 936 aa18.29■□□□□ 0.52
VRK3-206ENST00000594090 RIMBP2O15034 1052 aa18.28■□□□□ 0.52
VRK3-206ENST00000594090 CHRNDQ07001 517 aa18.28■□□□□ 0.52
VRK3-206ENST00000594090 GPC2Q8N158 579 aa18.28■□□□□ 0.52
VRK3-206ENST00000594090 L3MBTL3Q96JM7 780 aaPredicted RBP18.28■□□□□ 0.52
VRK3-206ENST00000594090 SCN4AP35499 1836 aa18.27■□□□□ 0.52
VRK3-206ENST00000594090 POTECB2RU33 542 aa18.27■□□□□ 0.52
VRK3-206ENST00000594090 VEGFAP15692 232 aaPredicted RBP18.27■□□□□ 0.52
VRK3-206ENST00000594090 TMEM57Q8N5G2 664 aa18.27■□□□□ 0.52
VRK3-206ENST00000594090 ZC3H12CQ9C0D7 883 aaKnown RBP18.27■□□□□ 0.52
VRK3-206ENST00000594090 ANKRD2Q9GZV1 360 aa18.27■□□□□ 0.52
VRK3-206ENST00000594090 DBNDD1Q9H9R9 158 aa18.27■□□□□ 0.52
VRK3-206ENST00000594090 WTIPA6NIX2 430 aaPredicted RBP18.26■□□□□ 0.51
VRK3-206ENST00000594090 YDJCA8MPS7 323 aa18.26■□□□□ 0.51
VRK3-206ENST00000594090 LDHAL6AQ6ZMR3 332 aa18.26■□□□□ 0.51
VRK3-206ENST00000594090 FTSJ3Q8IY81 847 aaKnown RBP18.26■□□□□ 0.51
VRK3-206ENST00000594090 MED23Q9ULK4 1368 aa18.26■□□□□ 0.51
VRK3-206ENST00000594090 GNAI3P08754 354 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 C1QTNF8P60827 252 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 CXCL9Q07325 125 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 C16orf71Q8IYS4 520 aaPredicted RBP18.25■□□□□ 0.51
VRK3-206ENST00000594090 DZIP1LQ8IYY4 767 aaKnown RBP18.25■□□□□ 0.51
VRK3-206ENST00000594090 YTHDC1Q96MU7 727 aaKnown RBP18.25■□□□□ 0.51
VRK3-206ENST00000594090 CNNM1Q9NRU3 951 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 RCAN3Q9UKA8 241 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 HDAC5Q9UQL6 1122 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 LEMD3Q9Y2U8 911 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 LRRFIP2Q9Y608 721 aaKnown RBP18.25■□□□□ 0.51
VRK3-206ENST00000594090 GJA3Q9Y6H8 435 aa18.25■□□□□ 0.51
VRK3-206ENST00000594090 ECE2O60344 883 aa18.24■□□□□ 0.51
VRK3-206ENST00000594090 TOMM70O94826 608 aa18.24■□□□□ 0.51
VRK3-206ENST00000594090 RLBP1P12271 317 aa18.24■□□□□ 0.51
VRK3-206ENST00000594090 DOK7Q18PE1 504 aa18.24■□□□□ 0.51
VRK3-206ENST00000594090 ZNF804BA4D1E1 1349 aa18.24■□□□□ 0.51
VRK3-206ENST00000594090 IQCA1LA6NCM1 817 aa18.23■□□□□ 0.51
VRK3-206ENST00000594090 RAD17O75943 681 aa18.23■□□□□ 0.51
VRK3-206ENST00000594090 CIAPIN1Q6FI81 312 aa18.23■□□□□ 0.51
VRK3-206ENST00000594090 SCN9AQ15858 1988 aa18.23■□□□□ 0.51
VRK3-206ENST00000594090 KCNJ4P48050 445 aa18.23■□□□□ 0.51
VRK3-206ENST00000594090 HELBQ8NG08 1087 aaPredicted RBP18.23■□□□□ 0.51
VRK3-206ENST00000594090 PUS3Q9BZE2 481 aaKnown RBP18.23■□□□□ 0.51
VRK3-206ENST00000594090 PSME4Q14997 1843 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 G3V3G9 751 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 TAF5LO75529 589 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 RFX5P48382 616 aaPredicted RBP18.22■□□□□ 0.51
VRK3-206ENST00000594090 SCNN1DP51172 638 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 TNIP1Q15025 636 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 DCAF8Q5TAQ9 597 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 KLHDC4Q8TBB5 520 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 RBM46Q8TBY0 533 aaKnown RBP18.22■□□□□ 0.51
VRK3-206ENST00000594090 TAF1DQ9H5J8 278 aaPredicted RBP18.22■□□□□ 0.51
VRK3-206ENST00000594090 RIPOR2Q9Y4F9 1068 aa18.22■□□□□ 0.51
VRK3-206ENST00000594090 ITPRIPQ8IWB1 547 aa18.21■□□□□ 0.51
VRK3-206ENST00000594090 HACL1Q9UJ83 578 aa18.21■□□□□ 0.51
VRK3-206ENST00000594090 MROH5Q6ZUA9 1318 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 SNAP23O00161 211 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 PSMD14O00487 310 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 PLIN1O60240 522 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 KLRK1P26718 216 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 PTPN12Q05209 780 aaKnown RBP18.2■□□□□ 0.5
VRK3-206ENST00000594090 LRRC24Q50LG9 513 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 TXNRD3Q86VQ6 643 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 KCNQ5Q9NR82 932 aa18.2■□□□□ 0.5
VRK3-206ENST00000594090 IRS2Q9Y4H2 1338 aa18.19■□□□□ 0.5
VRK3-206ENST00000594090 ZNF646O15015 1829 aaPredicted RBP18.19■□□□□ 0.5
VRK3-206ENST00000594090 GNAI2P04899 355 aa18.19■□□□□ 0.5
VRK3-206ENST00000594090 LMOD1P29536 600 aaPredicted RBP18.19■□□□□ 0.5
VRK3-206ENST00000594090 EPHX2P34913 555 aa18.19■□□□□ 0.5
VRK3-206ENST00000594090 PANK1Q8TE04 598 aa18.19■□□□□ 0.5
VRK3-206ENST00000594090 ADAMTSL1Q8N6G6 1762 aa18.19■□□□□ 0.5
VRK3-206ENST00000594090 MS4A1P11836 297 aa18.18■□□□□ 0.5
VRK3-206ENST00000594090 GMPSP49915 693 aaPredicted RBP18.18■□□□□ 0.5
VRK3-206ENST00000594090 C15orf52Q6ZUT6 534 aaKnown RBP18.18■□□□□ 0.5
VRK3-206ENST00000594090 PODNQ7Z5L7 613 aa18.18■□□□□ 0.5
VRK3-206ENST00000594090 GPRC5DQ9NZD1 345 aa18.18■□□□□ 0.5
VRK3-206ENST00000594090 ZNF609O15014 1411 aa18.17■□□□□ 0.5
VRK3-206ENST00000594090 MTX1Q13505 466 aa18.17■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 94.3 ms