RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 CNTNAP1P78357 1384 aa13.54□□□□□ -0.24
VPS4B-207ENST00000591519 SCNN1DP51172 638 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 DDX46Q7L014 1031 aaKnown RBP13.53□□□□□ -0.24
VPS4B-207ENST00000591519 TMC4Q7Z404 712 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 NIM1KQ8IY84 436 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 HYPKQ9NX55 129 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 MKRN1Q9UHC7 482 aaKnown RBP13.53□□□□□ -0.24
VPS4B-207ENST00000591519 ZNRF3Q9ULT6 936 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 GJA3Q9Y6H8 435 aa13.53□□□□□ -0.24
VPS4B-207ENST00000591519 PPIP5K2O43314 1243 aa13.52□□□□□ -0.25
VPS4B-207ENST00000591519 LMOD1P29536 600 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-207ENST00000591519 EPS15P42566 896 aa13.52□□□□□ -0.25
VPS4B-207ENST00000591519 GRAPQ13588 217 aa13.52□□□□□ -0.25
VPS4B-207ENST00000591519 SF3B3Q15393 1217 aaKnown RBP13.52□□□□□ -0.25
VPS4B-207ENST00000591519 MAP1SQ66K74 1059 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-207ENST00000591519 USP50Q70EL3 339 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-207ENST00000591519 MPNDQ8N594 471 aa13.52□□□□□ -0.25
VPS4B-207ENST00000591519 GRAPLQ8TC17 118 aaPredicted RBP13.52□□□□□ -0.25
VPS4B-207ENST00000591519 MBIPQ9NS73 344 aa13.52□□□□□ -0.25
VPS4B-207ENST00000591519 CXCL9Q07325 125 aa13.51□□□□□ -0.25
VPS4B-207ENST00000591519 KIAA2012Q0VF49 1180 aa13.51□□□□□ -0.25
VPS4B-207ENST00000591519 AOC3Q16853 763 aa13.51□□□□□ -0.25
VPS4B-207ENST00000591519 DPP8Q6V1X1 898 aaPredicted RBP13.51□□□□□ -0.25
VPS4B-207ENST00000591519 IFT57Q9NWB7 429 aa13.51□□□□□ -0.25
VPS4B-207ENST00000591519 LAMB2P55268 1798 aa13.5□□□□□ -0.25
VPS4B-207ENST00000591519 LTBP1Q14766 1721 aa13.5□□□□□ -0.25
VPS4B-207ENST00000591519 APAF1O14727 1248 aa13.5□□□□□ -0.25
VPS4B-207ENST00000591519 CALD1Q05682 793 aaKnown RBP13.5□□□□□ -0.25
VPS4B-207ENST00000591519 FAM89AQ96GI7 184 aa13.5□□□□□ -0.25
VPS4B-207ENST00000591519 GPRC5DQ9NZD1 345 aa13.5□□□□□ -0.25
VPS4B-207ENST00000591519 RASSF10A6NK89 507 aa13.49□□□□□ -0.25
VPS4B-207ENST00000591519 VEGFBP49765 207 aa13.49□□□□□ -0.25
VPS4B-207ENST00000591519 GNAI1P63096 354 aa13.49□□□□□ -0.25
VPS4B-207ENST00000591519 DEFB115Q30KQ5 88 aa13.49□□□□□ -0.25
VPS4B-207ENST00000591519 ADARB2Q9NS39 739 aaKnown RBP13.49□□□□□ -0.25
VPS4B-207ENST00000591519 PGAP2Q9UHJ9 254 aa13.49□□□□□ -0.25
VPS4B-207ENST00000591519 ATP5J2-PTCD1G3V325 749 aa13.48□□□□□ -0.25
VPS4B-207ENST00000591519 TNIP1Q15025 636 aa13.48□□□□□ -0.25
VPS4B-207ENST00000591519 TNS4Q8IZW8 715 aa13.48□□□□□ -0.25
VPS4B-207ENST00000591519 CHMP4AQ9BY43 222 aa13.48□□□□□ -0.25
VPS4B-207ENST00000591519 BOLA1Q9Y3E2 137 aa13.48□□□□□ -0.25
VPS4B-207ENST00000591519 CDHR2Q9BYE9 1310 aa13.47□□□□□ -0.25
VPS4B-207ENST00000591519 TAF1P21675 1872 aa13.47□□□□□ -0.25
VPS4B-207ENST00000591519 CIAPIN1Q6FI81 312 aa13.47□□□□□ -0.25
VPS4B-207ENST00000591519 EFCAB3Q8N7B9 438 aa13.47□□□□□ -0.25
VPS4B-207ENST00000591519 WBP1LQ9NX94 342 aa13.47□□□□□ -0.25
VPS4B-207ENST00000591519 G3V3G9 751 aa13.46□□□□□ -0.25
VPS4B-207ENST00000591519 IRS4O14654 1257 aaPredicted RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 CST9Q5W186 159 aa13.46□□□□□ -0.25
VPS4B-207ENST00000591519 RIC3Q7Z5B4 369 aa13.46□□□□□ -0.25
VPS4B-207ENST00000591519 ZBTB38Q8NAP3 1195 aaPredicted RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 C8orf58Q8NAV2 365 aa13.46□□□□□ -0.25
VPS4B-207ENST00000591519 ZC3H15Q8WU90 426 aaKnown RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 CELF1Q92879 486 aaKnown RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 PHAXQ9H814 394 aaKnown RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 DDX60Q8IY21 1712 aaKnown RBP13.46□□□□□ -0.25
VPS4B-207ENST00000591519 YDJCA8MPS7 323 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 ELL2O00472 640 aaPredicted RBP13.45□□□□□ -0.26
VPS4B-207ENST00000591519 FOXN1O15353 648 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 HSP90B1P14625 803 aaKnown RBP13.45□□□□□ -0.26
VPS4B-207ENST00000591519 GMPSP49915 693 aaPredicted RBP13.45□□□□□ -0.26
VPS4B-207ENST00000591519 EMP3P54852 163 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 RPS8P62241 208 aaKnown RBP13.45□□□□□ -0.26
VPS4B-207ENST00000591519 WASHC4Q2M389 1173 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 CCDC191Q8NCU4 936 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 PRDM10Q9NQV6 1147 aa13.45□□□□□ -0.26
VPS4B-207ENST00000591519 NSFL1CQ9UNZ2 370 aaKnown RBP13.45□□□□□ -0.26
VPS4B-207ENST00000591519 LRRC37AA6NMS7 1700 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 WDR33Q9C0J8 1336 aaKnown RBP13.44□□□□□ -0.26
VPS4B-207ENST00000591519 RAD17O75943 681 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 FMR1Q06787 632 aaKnown RBP eCLIP13.44□□□□□ -0.26
VPS4B-207ENST00000591519 CCDC30Q5VVM6 783 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 DPF2Q92785 391 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 ZNF428Q96B54 188 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 POLLQ9UGP5 575 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 ABT1Q9ULW3 272 aaKnown RBP13.44□□□□□ -0.26
VPS4B-207ENST00000591519 DUOX1Q9NRD9 1551 aa13.44□□□□□ -0.26
VPS4B-207ENST00000591519 PCCAP05165 728 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 CTCFP49711 727 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 HIRAP54198 1017 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 GPSM2P81274 684 aa13.43□□□□□ -0.26
VPS4B-207ENST00000591519 CCDC27Q2M243 656 aa13.43□□□□□ -0.26
VPS4B-207ENST00000591519 RTL5Q5HYW3 569 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 RNF25Q96BH1 459 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 METTL22Q9BUU2 404 aaPredicted RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 PODXL2Q9NZ53 605 aa13.43□□□□□ -0.26
VPS4B-207ENST00000591519 CNOT7Q9UIV1 285 aaKnown RBP13.43□□□□□ -0.26
VPS4B-207ENST00000591519 TRPM7Q96QT4 1865 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 TRAF5O00463 557 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 MAP2K1Q02750 393 aaPredicted RBP13.42□□□□□ -0.26
VPS4B-207ENST00000591519 TBC1D16Q8TBP0 767 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 AIDAQ96BJ3 306 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 EYA3Q99504 573 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 BCL2L13Q9BXK5 485 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 TLL2Q9Y6L7 1015 aa13.42□□□□□ -0.26
VPS4B-207ENST00000591519 C6orf229H3BNL8 230 aa13.41□□□□□ -0.26
VPS4B-207ENST00000591519 H7C1D1 291 aa13.41□□□□□ -0.26
VPS4B-207ENST00000591519 PDE8AO60658 829 aa13.41□□□□□ -0.26
VPS4B-207ENST00000591519 DDX58O95786 925 aaKnown RBP13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 92.2 ms