RNA–Protein interactions for RNA: ENST00000591226.1

TPM4-213, Transcript of tropomyosin 4, human

Gene TPM4, Length 2,672 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TPM4-213	ENST00000591226	PAG1	Q9NWQ8	432 aa		13.58	□□□□□ -0.23
TPM4-213	ENST00000591226	RIC1	Q4ADV7	1423 aa		13.58	□□□□□ -0.24
TPM4-213	ENST00000591226	ADORA1	P30542	326 aa		13.58	□□□□□ -0.24
TPM4-213	ENST00000591226	SLC27A2	O14975	620 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	BAG4	O95429	457 aa	Known RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	CCDC129	Q6ZRS4	1044 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	CLEC17A	Q6ZS10	378 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	SEC62	Q99442	399 aa	Known RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	TAF5L	O75529	589 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	IFIT1	P09914	478 aa	Known RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	ZKSCAN1	P17029	563 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	SMARCC1	Q92922	1105 aa	Predicted RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	INTS4	Q96HW7	963 aa	Known RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	LARP6	Q9BRS8	491 aa	Known RBP	13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	ZDHHC9	Q9Y397	364 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	ANKRD18B	A2A2Z9	1011 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	PDE8A	O60658	829 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	CAMTA2	O94983	1202 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	RUFY3	Q7L099	469 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	TM6SF1	Q9BZW5	370 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	ZSWIM6	Q9HCJ5	1215 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	AKAP2	Q9Y2D5	859 aa		13.57	□□□□□ -0.24
TPM4-213	ENST00000591226	SUSD4	Q5VX71	490 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	LDHAL6A	Q6ZMR3	332 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	XAGE2	Q96GT9	111 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	RIPOR2	Q9Y4F9	1068 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	TAF6L	Q9Y6J9	622 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	COL5A3	P25940	1745 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	FAM177B	A6PVY3	158 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	SLFNL1	Q499Z3	407 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	METTL24	Q5JXM2	366 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	FNBP4	Q8N3X1	1017 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	GZF1	Q9H116	711 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	PDRG1	Q9NUG6	133 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	CYP46A1	Q9Y6A2	500 aa		13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	RPAP1	Q9BWH6	1393 aa	Predicted RBP	13.56	□□□□□ -0.24
TPM4-213	ENST00000591226	MCMDC2	Q4G0Z9	681 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	GORAB	Q5T7V8	394 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	CNNM1	Q9NRU3	951 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	LIMCH1	Q9UPQ0	1083 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	SH3TC1	Q8TE82	1336 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	HCLS1	P14317	486 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	COL9A3	Q14050	684 aa	Predicted RBP	13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	TTC39A	Q5SRH9	613 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	VPS53	Q5VIR6	699 aa		13.55	□□□□□ -0.24
TPM4-213	ENST00000591226	SPEF2	Q9C093	1822 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	ATP2B3	Q16720	1220 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	CCDC158	Q5M9N0	1113 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	RNF20	Q5VTR2	975 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	PTF1A	Q7RTS3	328 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	LARGE1	O95461	756 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	KCNQ4	P56696	695 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	FOXD4L5	Q5VV16	416 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	USPL1	Q5W0Q7	1092 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	LINC00116	Q8NCU8	138 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	USP21	Q9UK80	565 aa		13.54	□□□□□ -0.24
TPM4-213	ENST00000591226	GOLGA6L22	H0YM25	854 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	ECM2	O94769	699 aa	Predicted RBP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	RBM10	P98175	930 aa	Known RBP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	FKBP4	Q02790	459 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	SCARF1	Q14162	830 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	MCTP1	Q6DN14	999 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	UTP14A	Q9BVJ6	771 aa	Known RBP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	ATF5	Q9Y2D1	282 aa	Predicted RBP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	LRP5	O75197	1615 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	PTMS	P20962	102 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	VGLL2	Q8N8G2	317 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	HMG20B	Q9P0W2	317 aa		13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.53	□□□□□ -0.24
TPM4-213	ENST00000591226	PARP10	Q53GL7	1025 aa		13.52	□□□□□ -0.24
TPM4-213	ENST00000591226	ZMYM1	Q5SVZ6	1142 aa		13.52	□□□□□ -0.24
TPM4-213	ENST00000591226	HELLS	Q9NRZ9	838 aa		13.52	□□□□□ -0.24
TPM4-213	ENST00000591226	ZNF831	Q5JPB2	1677 aa		13.52	□□□□□ -0.24
TPM4-213	ENST00000591226	SPATA31A6	Q5VVP1	1343 aa		13.52	□□□□□ -0.24
TPM4-213	ENST00000591226	DDX60	Q8IY21	1712 aa	Known RBP	13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	RGL2	O15211	777 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	BRD1	O95696	1058 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	PSMA5	P28066	241 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	CHAMP1	Q96JM3	812 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	AK7	Q96M32	723 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226		U3KPZ7	1027 aa	Predicted RBP	13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	BCOR	Q6W2J9	1755 aa		13.52	□□□□□ -0.25
TPM4-213	ENST00000591226	THSD7A	Q9UPZ6	1657 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	RNF113A	O15541	343 aa	Known RBP	13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	NTSR2	O95665	410 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	TSGA10IP	Q3SY00	556 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	BLOC1S2	Q6QNY1	142 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	PI16	Q6UXB8	463 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	TCEANC2	Q96MN5	208 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	MYCN	P04198	464 aa	Predicted RBP	13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	TICAM2	Q86XR7	235 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	MAST3	O60307	1309 aa		13.51	□□□□□ -0.25
TPM4-213	ENST00000591226	RPS6KB1	P23443	525 aa		13.5	□□□□□ -0.25
TPM4-213	ENST00000591226	ZAP70	P43403	619 aa		13.5	□□□□□ -0.25
TPM4-213	ENST00000591226	SKOR2	Q2VWA4	1001 aa	Predicted RBP	13.5	□□□□□ -0.25
TPM4-213	ENST00000591226	FAM182B	Q5T319	152 aa		13.5	□□□□□ -0.25
TPM4-213	ENST00000591226	BTAF1	O14981	1849 aa		13.5	□□□□□ -0.25
TPM4-213	ENST00000591226	PDE8B	O95263	885 aa		13.5	□□□□□ -0.25

Retrieved 100 of 20,778 RNA–protein pairs in 103.6 ms