RNA–Protein interactions for RNA: ENST00000587338.1

SDF2-204, Transcript of stromal cell derived factor 2, humanhuman

TSL 3

Gene SDF2, Length 583 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDF2-204ENST00000587338 COPS6Q7L5N1 327 aa11.24□□□□□ -0.61
SDF2-204ENST00000587338 REM2Q8IYK8 340 aaPredicted RBP11.24□□□□□ -0.61
SDF2-204ENST00000587338 XAGE3Q8WTP9 111 aa11.24□□□□□ -0.61
SDF2-204ENST00000587338 ZNF296Q8WUU4 475 aaPredicted RBP11.24□□□□□ -0.61
SDF2-204ENST00000587338 CELF1Q92879 486 aaKnown RBP11.24□□□□□ -0.61
SDF2-204ENST00000587338 EYA3Q99504 573 aa11.24□□□□□ -0.61
SDF2-204ENST00000587338 POLLQ9UGP5 575 aa11.24□□□□□ -0.61
SDF2-204ENST00000587338 TBC1D8O95759 1140 aa11.23□□□□□ -0.61
SDF2-204ENST00000587338 TCIRG1Q13488 830 aa11.23□□□□□ -0.61
SDF2-204ENST00000587338 ANGEL2Q5VTE6 544 aaKnown RBP11.23□□□□□ -0.61
SDF2-204ENST00000587338 MAPK8IP3Q9UPT6 1336 aa11.23□□□□□ -0.61
SDF2-204ENST00000587338 G3V3G9 751 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 DCAF8Q5TAQ9 597 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 MOB2Q70IA6 237 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 DDX60Q8IY21 1712 aaKnown RBP11.22□□□□□ -0.61
SDF2-204ENST00000587338 TBC1D16Q8TBP0 767 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 GCC1Q96CN9 775 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 PLEKHF1Q96S99 279 aa11.22□□□□□ -0.61
SDF2-204ENST00000587338 PAPPA2Q9BXP8 1791 aa11.21□□□□□ -0.61
SDF2-204ENST00000587338 VIL1P09327 827 aaKnown RBP11.21□□□□□ -0.61
SDF2-204ENST00000587338 FKBP1BP68106 108 aa11.21□□□□□ -0.61
SDF2-204ENST00000587338 SCARF1Q14162 830 aa11.21□□□□□ -0.61
SDF2-204ENST00000587338 FAM89AQ96GI7 184 aa11.21□□□□□ -0.61
SDF2-204ENST00000587338 ZC3H12CQ9C0D7 883 aaKnown RBP11.21□□□□□ -0.61
SDF2-204ENST00000587338 SCAF8Q9UPN6 1271 aaKnown RBP11.21□□□□□ -0.61
SDF2-204ENST00000587338 CENPFP49454 3210 aa11.21□□□□□ -0.62
SDF2-204ENST00000587338 COL4A1P02462 1669 aa11.2□□□□□ -0.62
SDF2-204ENST00000587338 SCN9AQ15858 1988 aa11.2□□□□□ -0.62
SDF2-204ENST00000587338 UBE2Q2LH0YL09 131 aa11.2□□□□□ -0.62
SDF2-204ENST00000587338 UFL1O94874 794 aa11.2□□□□□ -0.62
SDF2-204ENST00000587338 MKRN3Q13064 507 aaKnown RBP11.2□□□□□ -0.62
SDF2-204ENST00000587338 SF3B3Q15393 1217 aaKnown RBP11.2□□□□□ -0.62
SDF2-204ENST00000587338 RTL5Q5HYW3 569 aaPredicted RBP11.2□□□□□ -0.62
SDF2-204ENST00000587338 FBXO46Q6PJ61 603 aaPredicted RBP11.2□□□□□ -0.62
SDF2-204ENST00000587338 GPR25O00155 361 aa11.19□□□□□ -0.62
SDF2-204ENST00000587338 ZNF280AP59817 542 aaPredicted RBP11.19□□□□□ -0.62
SDF2-204ENST00000587338 TTLL12Q14166 644 aaPredicted RBP11.19□□□□□ -0.62
SDF2-204ENST00000587338 PRAMEF18Q5VWM3 479 aa11.19□□□□□ -0.62
SDF2-204ENST00000587338 RSBN1LQ6PCB5 846 aaPredicted RBP11.19□□□□□ -0.62
SDF2-204ENST00000587338 AGBL3Q8NEM8 1001 aa11.19□□□□□ -0.62
SDF2-204ENST00000587338 MYOZ2Q9NPC6 264 aa11.19□□□□□ -0.62
SDF2-204ENST00000587338 ANKIB1Q9P2G1 1089 aa11.19□□□□□ -0.62
SDF2-204ENST00000587338 ATP5J2-PTCD1G3V325 749 aa11.18□□□□□ -0.62
SDF2-204ENST00000587338 RPS8P62241 208 aaKnown RBP11.18□□□□□ -0.62
SDF2-204ENST00000587338 HABP4Q5JVS0 413 aaKnown RBP11.18□□□□□ -0.62
SDF2-204ENST00000587338 CHPF2Q9P2E5 772 aa11.18□□□□□ -0.62
SDF2-204ENST00000587338 GGA1Q9UJY5 639 aa11.18□□□□□ -0.62
SDF2-204ENST00000587338 PITPNM2Q9BZ72 1349 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 IRS4O14654 1257 aaPredicted RBP11.17□□□□□ -0.62
SDF2-204ENST00000587338 FKTNO75072 461 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 USP17L8P0C7I0 530 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 KRT24Q2M2I5 525 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 PLBD2Q8NHP8 589 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 PNNQ9H307 717 aaKnown RBP11.17□□□□□ -0.62
SDF2-204ENST00000587338 PODXL2Q9NZ53 605 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 ZNF609O15014 1411 aa11.17□□□□□ -0.62
SDF2-204ENST00000587338 NF2P35240 595 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 TM4SF4P48230 202 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 RIPK4P57078 832 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 CACNB1Q02641 598 aaPredicted RBP11.16□□□□□ -0.62
SDF2-204ENST00000587338 SREBF2Q12772 1141 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 NOM1Q5C9Z4 860 aaKnown RBP11.16□□□□□ -0.62
SDF2-204ENST00000587338 ISCA1Q9BUE6 129 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 SEC31BQ9NQW1 1179 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 BABAM1Q9NWV8 329 aa11.16□□□□□ -0.62
SDF2-204ENST00000587338 CEP290O15078 2479 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 NBPF9Q3BBW0 867 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 HDGFL1Q5TGJ6 251 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 ANKRD13DQ6ZTN6 518 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 GMLQ99445 158 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 R3HDMLQ9H3Y0 253 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 BRCA2P51587 3418 aa11.15□□□□□ -0.62
SDF2-204ENST00000587338 KIAA0100Q14667 2235 aaKnown RBP11.15□□□□□ -0.63
SDF2-204ENST00000587338 USP17L3A6NCW0 530 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 USP17L4A6NCW7 530 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 LMOD3Q0VAK6 560 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 MAPK8IP2Q13387 824 aaPredicted RBP11.14□□□□□ -0.63
SDF2-204ENST00000587338 PRKG1Q13976 671 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 USP17L1Q7RTZ2 530 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 CCDC85AQ96PX6 553 aaPredicted RBP11.14□□□□□ -0.63
SDF2-204ENST00000587338 LAS1LQ9Y4W2 734 aaKnown RBP11.14□□□□□ -0.63
SDF2-204ENST00000587338 TRIM17Q9Y577 477 aa11.14□□□□□ -0.63
SDF2-204ENST00000587338 POTEFA5A3E0 1075 aa11.13□□□□□ -0.63
SDF2-204ENST00000587338 FBXW7Q969H0 707 aa11.13□□□□□ -0.63
SDF2-204ENST00000587338 CFHR5Q9BXR6 569 aa11.13□□□□□ -0.63
SDF2-204ENST00000587338 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.13□□□□□ -0.63
SDF2-204ENST00000587338 DBF4Q9UBU7 674 aaPredicted RBP11.13□□□□□ -0.63
SDF2-204ENST00000587338 XDHP47989 1333 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 PSME4Q14997 1843 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 SASH1O94885 1247 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 TMPOP42166 694 aaKnown RBP11.12□□□□□ -0.63
SDF2-204ENST00000587338 PTPN12Q05209 780 aaKnown RBP11.12□□□□□ -0.63
SDF2-204ENST00000587338 CCDC152Q4G0S7 254 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 ARMC9Q7Z3E5 817 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 PODNQ7Z5L7 613 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 OGFOD1Q8N543 542 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 ZBTB38Q8NAP3 1195 aaPredicted RBP11.12□□□□□ -0.63
SDF2-204ENST00000587338 MXD3Q9BW11 206 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 TRIOBPQ9H2D6 2365 aa11.12□□□□□ -0.63
SDF2-204ENST00000587338 WNT10BO00744 389 aa11.11□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms