RNA–Protein interactions for RNA: ENST00000585031.2

TOP3A-220, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 4

Gene TOP3A, Length 575 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-220ENST00000585031 CDCA5Q96FF9 252 aa23.83■■□□□ 1.41
TOP3A-220ENST00000585031 C6orf229H3BNL8 230 aa23.82■■□□□ 1.4
TOP3A-220ENST00000585031 HSP90AB3PQ58FF7 597 aa23.82■■□□□ 1.4
TOP3A-220ENST00000585031 TMC4Q7Z404 712 aa23.82■■□□□ 1.4
TOP3A-220ENST00000585031 VIL1P09327 827 aaKnown RBP23.81■■□□□ 1.4
TOP3A-220ENST00000585031 KRT24Q2M2I5 525 aa23.81■■□□□ 1.4
TOP3A-220ENST00000585031 MOB2Q70IA6 237 aa23.81■■□□□ 1.4
TOP3A-220ENST00000585031 FAM89AQ96GI7 184 aa23.81■■□□□ 1.4
TOP3A-220ENST00000585031 SF3B3Q15393 1217 aaKnown RBP23.8■■□□□ 1.4
TOP3A-220ENST00000585031 TBC1D16Q8TBP0 767 aa23.8■■□□□ 1.4
TOP3A-220ENST00000585031 SCAF8Q9UPN6 1271 aaKnown RBP23.8■■□□□ 1.4
TOP3A-220ENST00000585031 HTTP42858 3142 aa23.8■■□□□ 1.4
TOP3A-220ENST00000585031 NEFMP07197 916 aa23.79■■□□□ 1.4
TOP3A-220ENST00000585031 SULF1Q8IWU6 871 aa23.79■■□□□ 1.4
TOP3A-220ENST00000585031 ZNF296Q8WUU4 475 aaPredicted RBP23.79■■□□□ 1.4
TOP3A-220ENST00000585031 PSME4Q14997 1843 aa23.79■■□□□ 1.4
TOP3A-220ENST00000585031 CENPFP49454 3210 aa23.78■■□□□ 1.4
TOP3A-220ENST00000585031 HABP4Q5JVS0 413 aaKnown RBP23.78■■□□□ 1.4
TOP3A-220ENST00000585031 HDAC9Q9UKV0 1011 aa23.78■■□□□ 1.4
TOP3A-220ENST00000585031 TBC1D8O95759 1140 aa23.77■■□□□ 1.4
TOP3A-220ENST00000585031 SCARF1Q14162 830 aa23.77■■□□□ 1.4
TOP3A-220ENST00000585031 NOM1Q5C9Z4 860 aaKnown RBP23.77■■□□□ 1.4
TOP3A-220ENST00000585031 RTL5Q5HYW3 569 aaPredicted RBP23.77■■□□□ 1.4
TOP3A-220ENST00000585031 ANGEL2Q5VTE6 544 aaKnown RBP23.77■■□□□ 1.4
TOP3A-220ENST00000585031 ISCA1Q9BUE6 129 aa23.77■■□□□ 1.4
TOP3A-220ENST00000585031 PAPPA2Q9BXP8 1791 aa23.76■■□□□ 1.39
TOP3A-220ENST00000585031 ATP5J2-PTCD1G3V325 749 aa23.76■■□□□ 1.39
TOP3A-220ENST00000585031 FKBP1BP68106 108 aa23.76■■□□□ 1.39
TOP3A-220ENST00000585031 ZNF280AP59817 542 aaPredicted RBP23.75■■□□□ 1.39
TOP3A-220ENST00000585031 FBXO46Q6PJ61 603 aaPredicted RBP23.75■■□□□ 1.39
TOP3A-220ENST00000585031 RIPK4P57078 832 aa23.74■■□□□ 1.39
TOP3A-220ENST00000585031 PRAMEF18Q5VWM3 479 aa23.74■■□□□ 1.39
TOP3A-220ENST00000585031 GMLQ99445 158 aa23.74■■□□□ 1.39
TOP3A-220ENST00000585031 CHPF2Q9P2E5 772 aa23.74■■□□□ 1.39
TOP3A-220ENST00000585031 UBE2Q2LH0YL09 131 aa23.73■■□□□ 1.39
TOP3A-220ENST00000585031 TM4SF4P48230 202 aa23.73■■□□□ 1.39
TOP3A-220ENST00000585031 RPS8P62241 208 aaKnown RBP23.73■■□□□ 1.39
TOP3A-220ENST00000585031 EYA3Q99504 573 aa23.73■■□□□ 1.39
TOP3A-220ENST00000585031 SEC31BQ9NQW1 1179 aa23.73■■□□□ 1.39
TOP3A-220ENST00000585031 BRCA2P51587 3418 aa23.72■■□□□ 1.39
TOP3A-220ENST00000585031 GPR25O00155 361 aa23.72■■□□□ 1.39
TOP3A-220ENST00000585031 R3HDMLQ9H3Y0 253 aa23.72■■□□□ 1.39
TOP3A-220ENST00000585031 BABAM1Q9NWV8 329 aa23.72■■□□□ 1.39
TOP3A-220ENST00000585031 MAPK8IP3Q9UPT6 1336 aa23.72■■□□□ 1.39
TOP3A-220ENST00000585031 RSBN1LQ6PCB5 846 aaPredicted RBP23.71■■□□□ 1.39
TOP3A-220ENST00000585031 PLBD2Q8NHP8 589 aa23.71■■□□□ 1.39
TOP3A-220ENST00000585031 ZC3H12CQ9C0D7 883 aaKnown RBP23.71■■□□□ 1.39
TOP3A-220ENST00000585031 PODXL2Q9NZ53 605 aa23.71■■□□□ 1.39
TOP3A-220ENST00000585031 ZNF646O15015 1829 aaPredicted RBP23.7■■□□□ 1.39
TOP3A-220ENST00000585031 ZNF609O15014 1411 aa23.7■■□□□ 1.38
TOP3A-220ENST00000585031 ANKRD13DQ6ZTN6 518 aa23.7■■□□□ 1.38
TOP3A-220ENST00000585031 WTIPA6NIX2 430 aaPredicted RBP23.69■■□□□ 1.38
TOP3A-220ENST00000585031 IRS4O14654 1257 aaPredicted RBP23.68■■□□□ 1.38
TOP3A-220ENST00000585031 UFL1O94874 794 aa23.68■■□□□ 1.38
TOP3A-220ENST00000585031 AGBL3Q8NEM8 1001 aa23.68■■□□□ 1.38
TOP3A-220ENST00000585031 CFHR5Q9BXR6 569 aa23.68■■□□□ 1.38
TOP3A-220ENST00000585031 MYOZ2Q9NPC6 264 aa23.68■■□□□ 1.38
TOP3A-220ENST00000585031 TMPOP42166 694 aaKnown RBP23.67■■□□□ 1.38
TOP3A-220ENST00000585031 PITPNM2Q9BZ72 1349 aa23.66■■□□□ 1.38
TOP3A-220ENST00000585031 CHL1O00533 1208 aa23.66■■□□□ 1.38
TOP3A-220ENST00000585031 MKRN3Q13064 507 aaKnown RBP23.66■■□□□ 1.38
TOP3A-220ENST00000585031 NBPF9Q3BBW0 867 aa23.66■■□□□ 1.38
TOP3A-220ENST00000585031 USP17L8P0C7I0 530 aa23.65■■□□□ 1.38
TOP3A-220ENST00000585031 MXD3Q9BW11 206 aa23.65■■□□□ 1.38
TOP3A-220ENST00000585031 ANKIB1Q9P2G1 1089 aa23.65■■□□□ 1.38
TOP3A-220ENST00000585031 GGA1Q9UJY5 639 aa23.65■■□□□ 1.38
TOP3A-220ENST00000585031 FKTNO75072 461 aa23.64■■□□□ 1.37
TOP3A-220ENST00000585031 TRIM28Q13263 835 aaKnown RBP23.64■■□□□ 1.37
TOP3A-220ENST00000585031 PNNQ9H307 717 aaKnown RBP23.64■■□□□ 1.37
TOP3A-220ENST00000585031 FXR1P51114 621 aaKnown RBP eCLIP23.63■■□□□ 1.37
TOP3A-220ENST00000585031 JARID2Q92833 1246 aaPredicted RBP23.63■■□□□ 1.37
TOP3A-220ENST00000585031 G3V3G9 751 aa23.62■■□□□ 1.37
TOP3A-220ENST00000585031 DCAF8Q5TAQ9 597 aa23.62■■□□□ 1.37
TOP3A-220ENST00000585031 HDGFL1Q5TGJ6 251 aa23.62■■□□□ 1.37
TOP3A-220ENST00000585031 POTEFA5A3E0 1075 aa23.61■■□□□ 1.37
TOP3A-220ENST00000585031 PTPN12Q05209 780 aaKnown RBP23.61■■□□□ 1.37
TOP3A-220ENST00000585031 CCDC85AQ96PX6 553 aaPredicted RBP23.61■■□□□ 1.37
TOP3A-220ENST00000585031 LAS1LQ9Y4W2 734 aaKnown RBP23.61■■□□□ 1.37
TOP3A-220ENST00000585031 KIAA0100Q14667 2235 aaKnown RBP23.61■■□□□ 1.37
TOP3A-220ENST00000585031 USP17L3A6NCW0 530 aa23.6■■□□□ 1.37
TOP3A-220ENST00000585031 USP17L4A6NCW7 530 aa23.6■■□□□ 1.37
TOP3A-220ENST00000585031 NEUROD2Q15784 382 aa23.6■■□□□ 1.37
TOP3A-220ENST00000585031 INTS3Q68E01 1043 aaKnown RBP23.6■■□□□ 1.37
TOP3A-220ENST00000585031 USP17L1Q7RTZ2 530 aa23.6■■□□□ 1.37
TOP3A-220ENST00000585031 TRIM35Q9UPQ4 493 aa23.6■■□□□ 1.37
TOP3A-220ENST00000585031 ZBTB38Q8NAP3 1195 aaPredicted RBP23.59■■□□□ 1.37
TOP3A-220ENST00000585031 DBF4Q9UBU7 674 aaPredicted RBP23.59■■□□□ 1.37
TOP3A-220ENST00000585031 SPEF2Q9C093 1822 aa23.59■■□□□ 1.37
TOP3A-220ENST00000585031 SREBF2Q12772 1141 aa23.58■■□□□ 1.37
TOP3A-220ENST00000585031 TTLL12Q14166 644 aaPredicted RBP23.58■■□□□ 1.37
TOP3A-220ENST00000585031 FZD1Q9UP38 647 aa23.58■■□□□ 1.37
TOP3A-220ENST00000585031 WNT10BO00744 389 aa23.57■■□□□ 1.36
TOP3A-220ENST00000585031 PRKG1Q13976 671 aa23.57■■□□□ 1.36
TOP3A-220ENST00000585031 DACT2Q5SW24 774 aa23.57■■□□□ 1.36
TOP3A-220ENST00000585031 CCDC146Q8IYE0 955 aa23.57■■□□□ 1.36
TOP3A-220ENST00000585031 PHAXQ9H814 394 aaKnown RBP23.57■■□□□ 1.36
TOP3A-220ENST00000585031 PODNQ7Z5L7 613 aa23.56■■□□□ 1.36
TOP3A-220ENST00000585031 HYPKQ9NX55 129 aa23.56■■□□□ 1.36
TOP3A-220ENST00000585031 XDHP47989 1333 aa23.56■■□□□ 1.36
TOP3A-220ENST00000585031 LMOD3Q0VAK6 560 aa23.55■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms