RNA–Protein interactions for RNA: ENST00000582448.5

SS18-221, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 5

Gene SS18, Length 585 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-221ENST00000582448 ATP10DQ9P241 1426 aa13.75□□□□□ -0.21
SS18-221ENST00000582448 BPHLQ86WA6 291 aaPredicted RBP13.75□□□□□ -0.21
SS18-221ENST00000582448 GGNBP2Q9H3C7 697 aa13.75□□□□□ -0.21
SS18-221ENST00000582448 MEGF6O75095 1541 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 ZNF787Q6DD87 383 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 MPNDQ8N594 471 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 FLAD1Q8NFF5 587 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 FAM174AQ8TBP5 190 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 PUS7Q96PZ0 661 aaKnown RBP13.74□□□□□ -0.21
SS18-221ENST00000582448 CD2APQ9Y5K6 639 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 WASF2Q9Y6W5 498 aa13.74□□□□□ -0.21
SS18-221ENST00000582448 GOLGB1Q14789 3259 aaKnown RBP13.74□□□□□ -0.21
SS18-221ENST00000582448 SHANK3Q9BYB0 1731 aa13.73□□□□□ -0.21
SS18-221ENST00000582448 FKBPLQ9UIM3 349 aa13.73□□□□□ -0.21
SS18-221ENST00000582448 DOT1LQ8TEK3 1739 aa13.73□□□□□ -0.21
SS18-221ENST00000582448 TUBGCP6Q96RT7 1819 aa13.72□□□□□ -0.21
SS18-221ENST00000582448 USP54Q70EL1 1684 aa13.72□□□□□ -0.21
SS18-221ENST00000582448 PALLDQ8WX93 1383 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 CGNL1Q0VF96 1302 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 QSER1Q2KHR3 1735 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 FYB1O15117 783 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 TMEM259Q4ZIN3 620 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 HSP90AB2PQ58FF8 381 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 GPKOWQ92917 476 aaPredicted RBP eCLIP13.71□□□□□ -0.21
SS18-221ENST00000582448 C1QTNF2Q9BXJ5 285 aa13.71□□□□□ -0.21
SS18-221ENST00000582448 IGSF1Q8N6C5 1336 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 PCDH11XQ9BZA7 1347 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 PCDH11YQ9BZA8 1340 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 HSPA6P17066 643 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 HMGB2P26583 209 aaKnown RBP13.7□□□□□ -0.22
SS18-221ENST00000582448 CDK15Q96Q40 435 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 TRIM34Q9BYJ4 488 aa13.7□□□□□ -0.22
SS18-221ENST00000582448 PRKRIP1Q9H875 184 aaPredicted RBP13.7□□□□□ -0.22
SS18-221ENST00000582448 SMG6Q86US8 1419 aaKnown RBP13.7□□□□□ -0.22
SS18-221ENST00000582448 RGPD2P0DJD1 1756 aa13.69□□□□□ -0.22
SS18-221ENST00000582448 MAGEB6P1A0A0J9YX57 407 aa13.69□□□□□ -0.22
SS18-221ENST00000582448 ARID5BQ14865 1188 aa13.69□□□□□ -0.22
SS18-221ENST00000582448 AMIGO3Q86WK7 504 aa13.69□□□□□ -0.22
SS18-221ENST00000582448 SMARCC1Q92922 1105 aaPredicted RBP13.69□□□□□ -0.22
SS18-221ENST00000582448 LY75O60449 1722 aa13.69□□□□□ -0.22
SS18-221ENST00000582448 COL24A1Q17RW2 1714 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 PPM1GO15355 546 aaPredicted RBP13.68□□□□□ -0.22
SS18-221ENST00000582448 CYP27B1O15528 508 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 NNTQ13423 1086 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 PDXDC2PQ6P474 469 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 PIGBQ92521 554 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 OCSTAMPQ9BR26 566 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 CARD14Q9BXL6 1004 aa13.68□□□□□ -0.22
SS18-221ENST00000582448 FAM208AQ9UK61 1670 aaKnown RBP13.67□□□□□ -0.22
SS18-221ENST00000582448 RTL1A6NKG5 1358 aa13.67□□□□□ -0.22
SS18-221ENST00000582448 ADH1CP00326 375 aa13.66□□□□□ -0.22
SS18-221ENST00000582448 GRM5P41594 1212 aa13.66□□□□□ -0.22
SS18-221ENST00000582448 RALBP1Q15311 655 aa13.66□□□□□ -0.22
SS18-221ENST00000582448 GMPR2Q9P2T1 348 aaKnown RBP13.66□□□□□ -0.22
SS18-221ENST00000582448 LOC102724428A0A0B4J2F2 783 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 SIK1P57059 783 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 ERFEQ4G0M1 354 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 LINC00116Q8NCU8 138 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 ARHGAP9Q9BRR9 750 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 KNSTRNQ9Y448 316 aa13.65□□□□□ -0.22
SS18-221ENST00000582448 ZC3H4Q9UPT8 1303 aaKnown RBP13.64□□□□□ -0.23
SS18-221ENST00000582448 INSRP06213 1382 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 TRMT44Q8IYL2 757 aaKnown RBP13.64□□□□□ -0.23
SS18-221ENST00000582448 PANK3Q9H999 370 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 ATP13A2Q9NQ11 1180 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 SPG7Q9UQ90 795 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 EMILIN1Q9Y6C2 1016 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 CEP350Q5VT06 3117 aa13.64□□□□□ -0.23
SS18-221ENST00000582448 NR3C2P08235 984 aa13.63□□□□□ -0.23
SS18-221ENST00000582448 SSFA2P28290 1259 aa13.63□□□□□ -0.23
SS18-221ENST00000582448 CNGB1Q14028 1251 aaPredicted RBP13.63□□□□□ -0.23
SS18-221ENST00000582448 MRS2Q9HD23 443 aa13.63□□□□□ -0.23
SS18-221ENST00000582448 TMOD3Q9NYL9 352 aa13.63□□□□□ -0.23
SS18-221ENST00000582448 ASAP1Q9ULH1 1129 aa13.63□□□□□ -0.23
SS18-221ENST00000582448 ADCY9O60503 1353 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 FLT4P35916 1363 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 MMP10P09238 476 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 ARHGAP27Q6ZUM4 889 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 KLF16Q9BXK1 252 aaPredicted RBP13.62□□□□□ -0.23
SS18-221ENST00000582448 BCS1LQ9Y276 419 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 C5P01031 1676 aa13.62□□□□□ -0.23
SS18-221ENST00000582448 A0A0G2JLW4 131 aa13.61□□□□□ -0.23
SS18-221ENST00000582448 CAPN5O15484 640 aaPredicted RBP13.61□□□□□ -0.23
SS18-221ENST00000582448 ITPK1Q13572 414 aa13.61□□□□□ -0.23
SS18-221ENST00000582448 SNRKQ9NRH2 765 aa13.6□□□□□ -0.23
SS18-221ENST00000582448 MYBBP1AQ9BQG0 1328 aaKnown RBP13.6□□□□□ -0.23
SS18-221ENST00000582448 C4BP0C0L5 1744 aa13.59□□□□□ -0.23
SS18-221ENST00000582448 NSD3Q9BZ95 1437 aa13.59□□□□□ -0.23
SS18-221ENST00000582448 TIMP2P16035 220 aa13.59□□□□□ -0.23
SS18-221ENST00000582448 TRAPPC3LQ5T215 181 aa13.59□□□□□ -0.23
SS18-221ENST00000582448 MAP4K5Q9Y4K4 846 aa13.59□□□□□ -0.23
SS18-221ENST00000582448 BMP1P13497 986 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 WDR4P57081 412 aaKnown RBP13.58□□□□□ -0.24
SS18-221ENST00000582448 PTK2Q05397 1052 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 NR5A1Q13285 461 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 VASH1Q7L8A9 365 aaPredicted RBP13.58□□□□□ -0.24
SS18-221ENST00000582448 TRIM46Q7Z4K8 759 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 IFNL2Q8IZJ0 200 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 BANK1Q8NDB2 785 aa13.58□□□□□ -0.24
SS18-221ENST00000582448 ATG3Q9NT62 314 aa13.58□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 130 ms