RNA–Protein interactions for RNA: ENST00000581265.1

RFFL-209, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 4

Gene RFFL, Length 596 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-209ENST00000581265 CASP8AP2Q9UKL3 1982 aa13.72□□□□□ -0.21
RFFL-209ENST00000581265 LRRC37AA6NMS7 1700 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 DDX60Q8IY21 1712 aaKnown RBP13.71□□□□□ -0.21
RFFL-209ENST00000581265 SHTN1A0MZ66 631 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 PSMD14O00487 310 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 RIMBP2O15034 1052 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 RPS12P25398 132 aaKnown RBP13.71□□□□□ -0.21
RFFL-209ENST00000581265 C8orf58Q8NAV2 365 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 TBC1D16Q8TBP0 767 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 GCC1Q96CN9 775 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 EYA3Q99504 573 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 DBNDD1Q9H9R9 158 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 PODXL2Q9NZ53 605 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 TRPM7Q96QT4 1865 aa13.71□□□□□ -0.21
RFFL-209ENST00000581265 PCCAP05165 728 aaPredicted RBP13.7□□□□□ -0.22
RFFL-209ENST00000581265 MYD88Q99836 296 aa13.7□□□□□ -0.22
RFFL-209ENST00000581265 ZC3H12CQ9C0D7 883 aaKnown RBP13.7□□□□□ -0.22
RFFL-209ENST00000581265 SEC31BQ9NQW1 1179 aa13.7□□□□□ -0.22
RFFL-209ENST00000581265 KCNQ5Q9NR82 932 aa13.7□□□□□ -0.22
RFFL-209ENST00000581265 ECE2O60344 883 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 PDE8AO60658 829 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 DOK7Q18PE1 504 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 CCDC152Q4G0S7 254 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 CCDC30Q5VVM6 783 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 SAMD7Q7Z3H4 446 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 USP48Q86UV5 1035 aa13.69□□□□□ -0.22
RFFL-209ENST00000581265 METTL22Q9BUU2 404 aaPredicted RBP13.69□□□□□ -0.22
RFFL-209ENST00000581265 CWC25Q9NXE8 425 aaPredicted RBP13.69□□□□□ -0.22
RFFL-209ENST00000581265 DDX58O95786 925 aaKnown RBP13.68□□□□□ -0.22
RFFL-209ENST00000581265 VIL1P09327 827 aaKnown RBP13.68□□□□□ -0.22
RFFL-209ENST00000581265 HUNKP57058 714 aa13.68□□□□□ -0.22
RFFL-209ENST00000581265 ANKIB1Q9P2G1 1089 aa13.68□□□□□ -0.22
RFFL-209ENST00000581265 RTL9Q8NET4 1388 aa13.68□□□□□ -0.22
RFFL-209ENST00000581265 PDE4DIPQ5VU43 2346 aa13.68□□□□□ -0.22
RFFL-209ENST00000581265 COL4A1P02462 1669 aa13.67□□□□□ -0.22
RFFL-209ENST00000581265 EGFRP00533 1210 aa13.67□□□□□ -0.22
RFFL-209ENST00000581265 TBC1D10BQ4KMP7 808 aaPredicted RBP13.67□□□□□ -0.22
RFFL-209ENST00000581265 KRT26Q7Z3Y9 468 aa13.67□□□□□ -0.22
RFFL-209ENST00000581265 TRPA1O75762 1119 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 UFL1O94874 794 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 KSR2Q6VAB6 950 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 CTU1Q7Z7A3 348 aaKnown RBP13.66□□□□□ -0.22
RFFL-209ENST00000581265 TSPYL6Q8N831 410 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 JARID2Q92833 1246 aaPredicted RBP13.66□□□□□ -0.22
RFFL-209ENST00000581265 DCPSQ96C86 337 aaKnown RBP13.66□□□□□ -0.22
RFFL-209ENST00000581265 ZIC5Q96T25 663 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 SAGE1Q9NXZ1 904 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 GGA1Q9UJY5 639 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 MAP3K2Q9Y2U5 619 aa13.66□□□□□ -0.22
RFFL-209ENST00000581265 PI4KAP2A4QPH2 592 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 G3V3G9 751 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 CCDC27Q2M243 656 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 RBM26Q5T8P6 1007 aaKnown RBP13.65□□□□□ -0.22
RFFL-209ENST00000581265 DCAF8Q5TAQ9 597 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 DLK2Q6UY11 383 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 PI4KAP1Q8N8J0 262 aa13.65□□□□□ -0.22
RFFL-209ENST00000581265 XDHP47989 1333 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 IGKV5-2P06315 115 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 ZNF280AP59817 542 aaPredicted RBP13.64□□□□□ -0.23
RFFL-209ENST00000581265 KIF23Q02241 960 aaPredicted RBP13.64□□□□□ -0.23
RFFL-209ENST00000581265 RGMBQ6NW40 437 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 ANKRD18AQ8IVF6 992 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 AGBL3Q8NEM8 1001 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 CCDC102AQ96A19 550 aa13.64□□□□□ -0.23
RFFL-209ENST00000581265 CCDC85AQ96PX6 553 aaPredicted RBP13.64□□□□□ -0.23
RFFL-209ENST00000581265 TNRC18O15417 2968 aaPredicted RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 ATP2B4P23634 1241 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 CTSWP56202 376 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 KIF4BQ2VIQ3 1234 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 NCBP3Q53F19 620 aaKnown RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 RSBN1LQ6PCB5 846 aaPredicted RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 PODNQ7Z5L7 613 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 WWC1Q8IX03 1113 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 C2orf69Q8N8R5 385 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 TTLL11Q8NHH1 800 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 GMLQ99445 158 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 CDC5LQ99459 802 aaKnown RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 STK31Q9BXU1 1019 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 GBA2Q9HCG7 927 aaPredicted RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 RNF186Q9NXI6 227 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 HDAC9Q9UKV0 1011 aa13.63□□□□□ -0.23
RFFL-209ENST00000581265 POLR2AP24928 1970 aaKnown RBP13.63□□□□□ -0.23
RFFL-209ENST00000581265 ADM5C9JUS6 153 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 ZNF157P51786 506 aaPredicted RBP13.62□□□□□ -0.23
RFFL-209ENST00000581265 NEXNQ0ZGT2 675 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 CCDC184Q52MB2 194 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 SULF1Q8IWU6 871 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 TSR2Q969E8 191 aaKnown RBP13.62□□□□□ -0.23
RFFL-209ENST00000581265 BSDC1Q9NW68 430 aaPredicted RBP13.62□□□□□ -0.23
RFFL-209ENST00000581265 HPS5Q9UPZ3 1129 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 ZNF609O15014 1411 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 SCN9AQ15858 1988 aa13.62□□□□□ -0.23
RFFL-209ENST00000581265 FAM155AB1AL88 458 aaPredicted RBP13.61□□□□□ -0.23
RFFL-209ENST00000581265 H7C1W4 665 aa13.61□□□□□ -0.23
RFFL-209ENST00000581265 SLC4A2P04920 1241 aa13.61□□□□□ -0.23
RFFL-209ENST00000581265 USP17L8P0C7I0 530 aa13.61□□□□□ -0.23
RFFL-209ENST00000581265 TWISTNBQ3B726 338 aaPredicted RBP13.61□□□□□ -0.23
RFFL-209ENST00000581265 MINPP1Q9UNW1 487 aa13.61□□□□□ -0.23
RFFL-209ENST00000581265 IL16Q14005 1332 aa13.61□□□□□ -0.23
RFFL-209ENST00000581265 USP17L3A6NCW0 530 aa13.6□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms