RNA–Protein interactions for RNA: ENST00000579466.1

MSI2-208, Transcript of musashi RNA binding protein 2, human

TSL 3

Gene MSI2, Length 186 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MSI2-208	ENST00000579466	TRIM35	Q9UPQ4	493 aa		12.52	□□□□□ -0.41
MSI2-208	ENST00000579466	ASTN2	O75129	1339 aa	Predicted RBP	12.52	□□□□□ -0.41
MSI2-208	ENST00000579466	UFL1	O94874	794 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	SF3B3	Q15393	1217 aa	Known RBP	12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	KIF4B	Q2VIQ3	1234 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	DUSP27	Q5VZP5	1158 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	RIC3	Q7Z5B4	369 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	TBC1D16	Q8TBP0	767 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	JARID2	Q92833	1246 aa	Predicted RBP	12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	EYA3	Q99504	573 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	GBA2	Q9HCG7	927 aa	Predicted RBP	12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	GGA3	Q9NZ52	723 aa		12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	MYBBP1A	Q9BQG0	1328 aa	Known RBP	12.51	□□□□□ -0.41
MSI2-208	ENST00000579466	ELL2	O00472	640 aa	Predicted RBP	12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	ZNF157	P51786	506 aa	Predicted RBP	12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	DDX10	Q13206	875 aa	Known RBP	12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	RGMB	Q6NW40	437 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	C2orf69	Q8N8R5	385 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	DPF2	Q92785	391 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	RUNDC1	Q96C34	613 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	PHAX	Q9H814	394 aa	Known RBP	12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	ANKIB1	Q9P2G1	1089 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	PSME4	Q14997	1843 aa		12.5	□□□□□ -0.41
MSI2-208	ENST00000579466	RPS8	P62241	208 aa	Known RBP	12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	KIF23	Q02241	960 aa	Predicted RBP	12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	GOLGA2	Q08379	1002 aa		12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	SULF1	Q8IWU6	871 aa		12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	MYD88	Q99836	296 aa		12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	MBIP	Q9NS73	344 aa		12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	HYPK	Q9NX55	129 aa		12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	SCAF8	Q9UPN6	1271 aa	Known RBP	12.49	□□□□□ -0.41
MSI2-208	ENST00000579466	FAM155A	B1AL88	458 aa	Predicted RBP	12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	TRPA1	O75762	1119 aa		12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	HOXB7	P09629	217 aa		12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	RPS12	P25398	132 aa	Known RBP	12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	CDCA5	Q96FF9	252 aa		12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	ZC3H12C	Q9C0D7	883 aa	Known RBP	12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	ADAMTS8	Q9UP79	889 aa		12.48	□□□□□ -0.41
MSI2-208	ENST00000579466	PDE4DIP	Q5VU43	2346 aa		12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	SLC34A2	O95436	690 aa		12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	SOX10	P56693	466 aa		12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	ANGEL2	Q5VTE6	544 aa	Known RBP	12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	GGA1	Q9UJY5	639 aa		12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	MYH3	P11055	1940 aa		12.47	□□□□□ -0.41
MSI2-208	ENST00000579466	RGS19	P49795	217 aa		12.46	□□□□□ -0.41
MSI2-208	ENST00000579466	ZBTB38	Q8NAP3	1195 aa	Predicted RBP	12.46	□□□□□ -0.41
MSI2-208	ENST00000579466	FBXW7	Q969H0	707 aa		12.46	□□□□□ -0.41
MSI2-208	ENST00000579466	CCDC102A	Q96A19	550 aa		12.46	□□□□□ -0.41
MSI2-208	ENST00000579466	RNF186	Q9NXI6	227 aa		12.46	□□□□□ -0.41
MSI2-208	ENST00000579466	SLC10A3	P09131	477 aa		12.45	□□□□□ -0.42
MSI2-208	ENST00000579466	VIL1	P09327	827 aa	Known RBP	12.45	□□□□□ -0.42
MSI2-208	ENST00000579466	SCARF1	Q14162	830 aa		12.45	□□□□□ -0.42
MSI2-208	ENST00000579466	CCDC152	Q4G0S7	254 aa		12.45	□□□□□ -0.42
MSI2-208	ENST00000579466	PAPPA2	Q9BXP8	1791 aa		12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	MOB2	Q70IA6	237 aa		12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	RASAL3	Q86YV0	1011 aa		12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	CWC25	Q9NXE8	425 aa	Predicted RBP	12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	PODXL2	Q9NZ53	605 aa		12.44	□□□□□ -0.42
MSI2-208	ENST00000579466	XDH	P47989	1333 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	WTIP	A6NIX2	430 aa	Predicted RBP	12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	APAF1	O14727	1248 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	PDE8A	O60658	829 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	PCCA	P05165	728 aa	Predicted RBP	12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	TRIM28	Q13263	835 aa	Known RBP	12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	PRAMEF18	Q5VWM3	479 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	ANKRD18A	Q8IVF6	992 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	CSRNP1	Q96S65	589 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	MXD3	Q9BW11	206 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	MYOZ2	Q9NPC6	264 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	SAGE1	Q9NXZ1	904 aa		12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	ZNF646	O15015	1829 aa	Predicted RBP	12.43	□□□□□ -0.42
MSI2-208	ENST00000579466	TNRC18	O15417	2968 aa	Predicted RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	USP17L8	P0C7I0	530 aa		12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	HSP90B1	P14625	803 aa	Known RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	ZNF280A	P59817	542 aa	Predicted RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	MKRN3	Q13064	507 aa	Known RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	TTLL12	Q14166	644 aa	Predicted RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	C8orf58	Q8NAV2	365 aa		12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	CCDC191	Q8NCU4	936 aa		12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	AGBL3	Q8NEM8	1001 aa		12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	MAP3K2	Q9Y2U5	619 aa		12.42	□□□□□ -0.42
MSI2-208	ENST00000579466	UBE2Q2L	H0YL09	131 aa		12.41	□□□□□ -0.42
MSI2-208	ENST00000579466	ZNF853	P0CG23	659 aa		12.41	□□□□□ -0.42
MSI2-208	ENST00000579466	GNAI1	P63096	354 aa		12.41	□□□□□ -0.42
MSI2-208	ENST00000579466	METTL22	Q9BUU2	404 aa	Predicted RBP	12.41	□□□□□ -0.42
MSI2-208	ENST00000579466	IFT57	Q9NWB7	429 aa		12.41	□□□□□ -0.42
MSI2-208	ENST00000579466	USP17L3	A6NCW0	530 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	USP17L4	A6NCW7	530 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	SASH1	O94885	1247 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	DDX58	O95786	925 aa	Known RBP	12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	ATP2B4	P23634	1241 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	CTSW	P56202	376 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	PRKG1	Q13976	671 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	NBPF9	Q3BBW0	867 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	USP17L1	Q7RTZ2	530 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	CDC5L	Q99459	802 aa	Known RBP	12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	GREM2	Q9H772	168 aa		12.4	□□□□□ -0.42
MSI2-208	ENST00000579466	ZNF609	O15014	1411 aa		12.39	□□□□□ -0.43

Retrieved 100 of 20,778 RNA–protein pairs in 14 ms