RNA–Protein interactions for RNA: ENST00000579061.5

SS18-212, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-212ENST00000579061 TNIP1Q15025 636 aa18.8■□□□□ 0.6
SS18-212ENST00000579061 CIAPIN1Q6FI81 312 aa18.8■□□□□ 0.6
SS18-212ENST00000579061 C9orf78Q9NZ63 289 aaPredicted RBP18.8■□□□□ 0.6
SS18-212ENST00000579061 UFL1O94874 794 aa18.79■□□□□ 0.6
SS18-212ENST00000579061 ITGA6P23229 1130 aa18.79■□□□□ 0.6
SS18-212ENST00000579061 ATP2B4P23634 1241 aa18.79■□□□□ 0.6
SS18-212ENST00000579061 IGHMBP2P38935 993 aaKnown RBP18.79■□□□□ 0.6
SS18-212ENST00000579061 SCNN1DP51172 638 aa18.79■□□□□ 0.6
SS18-212ENST00000579061 BRPF1P55201 1214 aaPredicted RBP18.79■□□□□ 0.6
SS18-212ENST00000579061 FAM161AQ3B820 660 aa18.79■□□□□ 0.6
SS18-212ENST00000579061 ZC3H12CQ9C0D7 883 aaKnown RBP18.79■□□□□ 0.6
SS18-212ENST00000579061 YDJCA8MPS7 323 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 RIMBP2O15034 1052 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 POTEIP0CG38 1075 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 POTEJP0CG39 1038 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 FOXO4P98177 505 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 SMC4Q9NTJ3 1288 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 MINPP1Q9UNW1 487 aa18.78■□□□□ 0.6
SS18-212ENST00000579061 UTYO14607 1347 aa18.77■□□□□ 0.6
SS18-212ENST00000579061 ANKRD18BA2A2Z9 1011 aa18.77■□□□□ 0.6
SS18-212ENST00000579061 GPRC5DQ9NZD1 345 aa18.77■□□□□ 0.6
SS18-212ENST00000579061 ECE2O60344 883 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 RAD17O75943 681 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 EAPPQ56P03 285 aaPredicted RBP18.76■□□□□ 0.59
SS18-212ENST00000579061 USP50Q70EL3 339 aaPredicted RBP18.76■□□□□ 0.59
SS18-212ENST00000579061 MPHOSPH8Q99549 860 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 BCL2L13Q9BXK5 485 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 DBNDD1Q9H9R9 158 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 PSME4Q14997 1843 aa18.76■□□□□ 0.59
SS18-212ENST00000579061 EPS15P42566 896 aa18.75■□□□□ 0.59
SS18-212ENST00000579061 GMPSP49915 693 aaPredicted RBP18.75■□□□□ 0.59
SS18-212ENST00000579061 IFIT5Q13325 482 aaKnown RBP18.75■□□□□ 0.59
SS18-212ENST00000579061 ANKRD2Q9GZV1 360 aa18.75■□□□□ 0.59
SS18-212ENST00000579061 LEMD3Q9Y2U8 911 aa18.75■□□□□ 0.59
SS18-212ENST00000579061 SCN9AQ15858 1988 aa18.75■□□□□ 0.59
SS18-212ENST00000579061 MED23Q9ULK4 1368 aa18.74■□□□□ 0.59
SS18-212ENST00000579061 CCT4P50991 539 aaKnown RBP18.74■□□□□ 0.59
SS18-212ENST00000579061 EPHA10Q5JZY3 1008 aa18.74■□□□□ 0.59
SS18-212ENST00000579061 LMBR1LQ6UX01 489 aa18.74■□□□□ 0.59
SS18-212ENST00000579061 DPF2Q92785 391 aa18.74■□□□□ 0.59
SS18-212ENST00000579061 GPR101Q96P66 508 aaPredicted RBP18.74■□□□□ 0.59
SS18-212ENST00000579061 ADARB2Q9NS39 739 aaKnown RBP18.74■□□□□ 0.59
SS18-212ENST00000579061 CLEC11AQ9Y240 323 aa18.74■□□□□ 0.59
SS18-212ENST00000579061 G3V3G9 751 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 NBPF7P0C2Y1 421 aaPredicted RBP18.73■□□□□ 0.59
SS18-212ENST00000579061 RARSP54136 660 aaKnown RBP18.73■□□□□ 0.59
SS18-212ENST00000579061 HNRNPUQ00839 825 aaKnown RBP eCLIP18.73■□□□□ 0.59
SS18-212ENST00000579061 DOK7Q18PE1 504 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 DCAF8Q5TAQ9 597 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 DNAJC5GQ8N7S2 189 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 CHMP3Q9Y3E7 222 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 PASKQ96RG2 1323 aa18.73■□□□□ 0.59
SS18-212ENST00000579061 PSMD14O00487 310 aa18.72■□□□□ 0.59
SS18-212ENST00000579061 RPS12P25398 132 aaKnown RBP18.72■□□□□ 0.59
SS18-212ENST00000579061 CCDC57Q2TAC2 916 aa18.72■□□□□ 0.59
SS18-212ENST00000579061 SUCLG2Q96I99 432 aa18.72■□□□□ 0.59
SS18-212ENST00000579061 A0A1B0GUL6 1792 aa18.72■□□□□ 0.59
SS18-212ENST00000579061 ITGBL1O95965 494 aaPredicted RBP18.71■□□□□ 0.59
SS18-212ENST00000579061 PODNQ7Z5L7 613 aa18.71■□□□□ 0.59
SS18-212ENST00000579061 KAZALD1Q96I82 304 aa18.71■□□□□ 0.59
SS18-212ENST00000579061 API5Q9BZZ5 524 aaKnown RBP18.71■□□□□ 0.59
SS18-212ENST00000579061 ZNF609O15014 1411 aa18.71■□□□□ 0.59
SS18-212ENST00000579061 KIF16BQ96L93 1317 aa18.71■□□□□ 0.59
SS18-212ENST00000579061 H7C1D1 291 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 VIL1P09327 827 aaKnown RBP18.7■□□□□ 0.58
SS18-212ENST00000579061 CHRNDQ07001 517 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 RABL6Q3YEC7 729 aaPredicted RBP18.7■□□□□ 0.58
SS18-212ENST00000579061 CNTROBQ8N137 903 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 ARHGAP45Q92619 1136 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 USP44Q9H0E7 712 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 CNOT7Q9UIV1 285 aaKnown RBP18.7■□□□□ 0.58
SS18-212ENST00000579061 NOB1Q9ULX3 412 aaKnown RBP18.7■□□□□ 0.58
SS18-212ENST00000579061 ZNF804BA4D1E1 1349 aa18.7■□□□□ 0.58
SS18-212ENST00000579061 KCNQ5Q9NR82 932 aa18.69■□□□□ 0.58
SS18-212ENST00000579061 WTIPA6NIX2 430 aaPredicted RBP18.68■□□□□ 0.58
SS18-212ENST00000579061 HTRA3P83110 453 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 TAF7LQ5H9L4 462 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 MAP1SQ66K74 1059 aaPredicted RBP18.68■□□□□ 0.58
SS18-212ENST00000579061 LDHAL6AQ6ZMR3 332 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 ZC3H15Q8WU90 426 aaKnown RBP18.68■□□□□ 0.58
SS18-212ENST00000579061 KLRG1Q96E93 195 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 COA1Q9GZY4 146 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 BICC1Q9H694 974 aaKnown RBP18.68■□□□□ 0.58
SS18-212ENST00000579061 CREBZFQ9NS37 354 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 PGAP2Q9UHJ9 254 aa18.68■□□□□ 0.58
SS18-212ENST00000579061 ZBTB12Q9Y330 459 aaPredicted RBP18.68■□□□□ 0.58
SS18-212ENST00000579061 C15orf52Q6ZUT6 534 aaKnown RBP18.67■□□□□ 0.58
SS18-212ENST00000579061 MICALL2Q8IY33 904 aa18.67■□□□□ 0.58
SS18-212ENST00000579061 AGBL3Q8NEM8 1001 aa18.67■□□□□ 0.58
SS18-212ENST00000579061 ZBED9Q6R2W3 1325 aa18.67■□□□□ 0.58
SS18-212ENST00000579061 TRPM7Q96QT4 1865 aa18.67■□□□□ 0.58
SS18-212ENST00000579061 USP17L3A6NCW0 530 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 USP17L4A6NCW7 530 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 KCNJ4P48050 445 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 RSBN1LQ6PCB5 846 aaPredicted RBP18.66■□□□□ 0.58
SS18-212ENST00000579061 USP17L1Q7RTZ2 530 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 ANKRD44Q8N8A2 993 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 ZNF594Q96JF6 807 aaPredicted RBP18.66■□□□□ 0.58
SS18-212ENST00000579061 CNNM1Q9NRU3 951 aa18.66■□□□□ 0.58
SS18-212ENST00000579061 ZNF646O15015 1829 aaPredicted RBP18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 68 ms