RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 TMOD3Q9NYL9 352 aa12.01□□□□□ -0.49
VPS53-220ENST00000576149 DTNBO60941 627 aa12□□□□□ -0.49
VPS53-220ENST00000576149 TCIRG1Q13488 830 aa12□□□□□ -0.49
VPS53-220ENST00000576149 LRRC24Q50LG9 513 aa12□□□□□ -0.49
VPS53-220ENST00000576149 CCDC129Q6ZRS4 1044 aa12□□□□□ -0.49
VPS53-220ENST00000576149 NEK1Q96PY6 1258 aa12□□□□□ -0.49
VPS53-220ENST00000576149 TOGARAM1Q9Y4F4 1720 aa12□□□□□ -0.49
VPS53-220ENST00000576149 TRIM28Q13263 835 aaKnown RBP12□□□□□ -0.49
VPS53-220ENST00000576149 CSPP1Q1MSJ5 1256 aa12□□□□□ -0.49
VPS53-220ENST00000576149 HS1BP3Q53T59 392 aa12□□□□□ -0.49
VPS53-220ENST00000576149 LARP1BQ659C4 914 aaKnown RBP12□□□□□ -0.49
VPS53-220ENST00000576149 PIAS4Q8N2W9 510 aaPredicted RBP12□□□□□ -0.49
VPS53-220ENST00000576149 ZNF594Q96JF6 807 aaPredicted RBP12□□□□□ -0.49
VPS53-220ENST00000576149 PAG1Q9NWQ8 432 aa12□□□□□ -0.49
VPS53-220ENST00000576149 TCHHQ07283 1943 aa12□□□□□ -0.49
VPS53-220ENST00000576149 VPS37CA5D8V6 355 aaPredicted RBP11.99□□□□□ -0.49
VPS53-220ENST00000576149 GOLIM4O00461 696 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 CYP21A2P08686 494 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 PDCP20941 246 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 DNM1Q05193 864 aaKnown RBP11.99□□□□□ -0.49
VPS53-220ENST00000576149 CCDC183Q5T5S1 534 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 TEX13AQ9BXU3 409 aaPredicted RBP11.99□□□□□ -0.49
VPS53-220ENST00000576149 HELLSQ9NRZ9 838 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 CCDC9Q9Y3X0 531 aaKnown RBP11.99□□□□□ -0.49
VPS53-220ENST00000576149 FIBPO43427 364 aa11.99□□□□□ -0.49
VPS53-220ENST00000576149 A0A1B0GUL7 405 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 ZSCAN30Q86W11 494 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 PIGBQ92521 554 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 PUS3Q9BZE2 481 aaKnown RBP11.98□□□□□ -0.49
VPS53-220ENST00000576149 ASAP1Q9ULH1 1129 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 LETM1O95202 739 aaPredicted RBP11.98□□□□□ -0.49
VPS53-220ENST00000576149 ZMYM1Q5SVZ6 1142 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 DNAJC10Q8IXB1 793 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS53-220ENST00000576149 NHSL1Q5SYE7 1610 aa11.98□□□□□ -0.49
VPS53-220ENST00000576149 IFIT1P09914 478 aaKnown RBP11.97□□□□□ -0.49
VPS53-220ENST00000576149 CCDC57Q2TAC2 916 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 RNF214Q8ND24 703 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 DSCC1Q9BVC3 393 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 PLA2G12BQ9BX93 195 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 CEP126Q9P2H0 1117 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 PCCAP05165 728 aaPredicted RBP11.97□□□□□ -0.49
VPS53-220ENST00000576149 KIF6Q6ZMV9 814 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 CDC37L1Q7L3B6 337 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 GTF3C6Q969F1 213 aa11.97□□□□□ -0.49
VPS53-220ENST00000576149 STARD3NLO95772 234 aa11.96□□□□□ -0.49
VPS53-220ENST00000576149 STK3Q13188 491 aa11.96□□□□□ -0.49
VPS53-220ENST00000576149 SLFNL1Q499Z3 407 aa11.96□□□□□ -0.49
VPS53-220ENST00000576149 Q6ZUG5 572 aa11.96□□□□□ -0.49
VPS53-220ENST00000576149 ZNF330Q9Y3S2 320 aaPredicted RBP11.96□□□□□ -0.49
VPS53-220ENST00000576149 CSF1RP07333 972 aa11.96□□□□□ -0.5
VPS53-220ENST00000576149 HMGB1P09429 215 aaKnown RBP11.96□□□□□ -0.5
VPS53-220ENST00000576149 KRT85P78386 507 aa11.96□□□□□ -0.5
VPS53-220ENST00000576149 STOX1Q6ZVD7 989 aa11.96□□□□□ -0.5
VPS53-220ENST00000576149 ZBTB38Q8NAP3 1195 aaPredicted RBP11.96□□□□□ -0.5
VPS53-220ENST00000576149 FAM184AQ8NB25 1140 aa11.96□□□□□ -0.5
VPS53-220ENST00000576149 BTG4Q9NY30 223 aa11.96□□□□□ -0.5
VPS53-220ENST00000576149 SPEF2Q9C093 1822 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 RNF113AO15541 343 aaKnown RBP11.95□□□□□ -0.5
VPS53-220ENST00000576149 FAM89AQ96GI7 184 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.95□□□□□ -0.5
VPS53-220ENST00000576149 BCCIPQ9P287 314 aaKnown RBP eCLIP11.95□□□□□ -0.5
VPS53-220ENST00000576149 AKAP2Q9Y2D5 859 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 HSPD1P10809 573 aaKnown RBP11.95□□□□□ -0.5
VPS53-220ENST00000576149 GIGYF2Q6Y7W6 1299 aaKnown RBP11.95□□□□□ -0.5
VPS53-220ENST00000576149 FERMT3Q86UX7 667 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 ELP1O95163 1332 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 MAP3K15Q6ZN16 1313 aa11.95□□□□□ -0.5
VPS53-220ENST00000576149 KDM4FA0A1W2PPD8 638 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 UVSSAQ2YD98 709 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 CCDC158Q5M9N0 1113 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 DHX32Q7L7V1 743 aaKnown RBP11.94□□□□□ -0.5
VPS53-220ENST00000576149 TTC6Q86TZ1 520 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 NOL7Q9UMY1 257 aaKnown RBP11.94□□□□□ -0.5
VPS53-220ENST00000576149 MAST3O60307 1309 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 DISP2A7MBM2 1401 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 MSNP26038 577 aaKnown RBP11.94□□□□□ -0.5
VPS53-220ENST00000576149 BRF1Q92994 677 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 XAGE2Q96GT9 111 aa11.94□□□□□ -0.5
VPS53-220ENST00000576149 CDHR2Q9BYE9 1310 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 JAK2O60674 1132 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 ADORA1P30542 326 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 EXOSC10Q01780 885 aaKnown RBP11.93□□□□□ -0.5
VPS53-220ENST00000576149 IFIT5Q13325 482 aaKnown RBP11.93□□□□□ -0.5
VPS53-220ENST00000576149 TTC39AQ5SRH9 613 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 FAM173BQ6P4H8 233 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 FUCA2Q9BTY2 467 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 AGXT2Q9BYV1 514 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 BCL9O00512 1426 aa11.93□□□□□ -0.5
VPS53-220ENST00000576149 PFKFB2O60825 505 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 FKBP4Q02790 459 aaKnown RBP eCLIP11.92□□□□□ -0.5
VPS53-220ENST00000576149 SCRN1Q12765 414 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 HLFQ16534 295 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 LRRFIP1Q32MZ4 808 aaKnown RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 GORABQ5T7V8 394 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 NLRP10Q86W26 655 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 SMARCC2Q8TAQ2 1214 aa11.92□□□□□ -0.5
VPS53-220ENST00000576149 CCDC85AQ96PX6 553 aaPredicted RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 LLPHQ9BRT6 129 aaKnown RBP11.92□□□□□ -0.5
VPS53-220ENST00000576149 LRRC2Q9BYS8 371 aa11.92□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms