RNA–Protein interactions for RNA: ENST00000575976.1

NUP88-211, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 599 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-211ENST00000575976 MPHOSPH8Q99549 860 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 PUS3Q9BZE2 481 aaKnown RBP10.68□□□□□ -0.7
NUP88-211ENST00000575976 PA2G4Q9UQ80 394 aaKnown RBP10.68□□□□□ -0.7
NUP88-211ENST00000575976 ATP6V0A2Q9Y487 856 aa10.68□□□□□ -0.7
NUP88-211ENST00000575976 BRCA1P38398 1863 aaKnown RBP10.68□□□□□ -0.7
NUP88-211ENST00000575976 LRRC24Q50LG9 513 aa10.67□□□□□ -0.7
NUP88-211ENST00000575976 LDHAL6AQ6ZMR3 332 aa10.67□□□□□ -0.7
NUP88-211ENST00000575976 TMC4Q7Z404 712 aa10.67□□□□□ -0.7
NUP88-211ENST00000575976 RPAP2Q8IXW5 612 aaPredicted RBP10.67□□□□□ -0.7
NUP88-211ENST00000575976 SSH3Q8TE77 659 aa10.67□□□□□ -0.7
NUP88-211ENST00000575976 BSDC1Q9NW68 430 aaPredicted RBP10.67□□□□□ -0.7
NUP88-211ENST00000575976 PCDHB15Q9Y5E8 787 aa10.67□□□□□ -0.7
NUP88-211ENST00000575976 TOMM70O94826 608 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 GPSM2P81274 684 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 CCDC93Q567U6 631 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 SIL1Q9H173 461 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 TMX4Q9H1E5 349 aaPredicted RBP10.66□□□□□ -0.7
NUP88-211ENST00000575976 COPRSQ9NQ92 184 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 CNNM1Q9NRU3 951 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 MINPP1Q9UNW1 487 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 RIPOR2Q9Y4F9 1068 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 CACNA1SQ13698 1873 aa10.66□□□□□ -0.7
NUP88-211ENST00000575976 EYA2O00167 538 aa10.65□□□□□ -0.7
NUP88-211ENST00000575976 CC2D2BQ6DHV5 1058 aa10.65□□□□□ -0.7
NUP88-211ENST00000575976 ARHGAP27Q6ZUM4 889 aa10.65□□□□□ -0.7
NUP88-211ENST00000575976 MPNDQ8N594 471 aa10.65□□□□□ -0.7
NUP88-211ENST00000575976 NSFL1CQ9UNZ2 370 aaKnown RBP10.65□□□□□ -0.7
NUP88-211ENST00000575976 KIF3CO14782 793 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 SURF6O75683 361 aaKnown RBP10.64□□□□□ -0.71
NUP88-211ENST00000575976 CIAO1O76071 339 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 CHRNDQ07001 517 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 AAMPQ13685 434 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 SOGA3Q5TF21 947 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 ATG9AQ7Z3C6 839 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 RTKN2Q8IZC4 609 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 HELBQ8NG08 1087 aaPredicted RBP10.64□□□□□ -0.71
NUP88-211ENST00000575976 FBXO3Q9UK99 471 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 SNED1Q8TER0 1413 aa10.64□□□□□ -0.71
NUP88-211ENST00000575976 WTIPA6NIX2 430 aaPredicted RBP10.63□□□□□ -0.71
NUP88-211ENST00000575976 NFKBIEO00221 500 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 HMMRO75330 724 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 TAF5LO75529 589 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 NEFLP07196 543 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 FKBP4Q02790 459 aaKnown RBP eCLIP10.63□□□□□ -0.71
NUP88-211ENST00000575976 RASSF7Q02833 373 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 G3BP1Q13283 466 aaKnown RBP eCLIP10.63□□□□□ -0.71
NUP88-211ENST00000575976 METTL24Q5JXM2 366 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 DPP8Q6V1X1 898 aaPredicted RBP10.63□□□□□ -0.71
NUP88-211ENST00000575976 ANKRD2Q9GZV1 360 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 PODXL2Q9NZ53 605 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 ANKIB1Q9P2G1 1089 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 NOP58Q9Y2X3 529 aaKnown RBP10.63□□□□□ -0.71
NUP88-211ENST00000575976 ARFGEF1Q9Y6D6 1849 aa10.63□□□□□ -0.71
NUP88-211ENST00000575976 XDHP47989 1333 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 MROH5Q6ZUA9 1318 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 C6orf229H3BNL8 230 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 SNAP23O00161 211 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 ATP2B4P23634 1241 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 IL15P40933 162 aaPredicted RBP10.62□□□□□ -0.71
NUP88-211ENST00000575976 CACNB1Q02641 598 aaPredicted RBP10.62□□□□□ -0.71
NUP88-211ENST00000575976 GRIPAP1Q4V328 841 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 TBC1D16Q8TBP0 767 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 GPR101Q96P66 508 aaPredicted RBP10.62□□□□□ -0.71
NUP88-211ENST00000575976 RTFDC1Q9BY42 306 aaPredicted RBP10.62□□□□□ -0.71
NUP88-211ENST00000575976 TAOK3Q9H2K8 898 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 PCDH10Q9P2E7 1040 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 POLLQ9UGP5 575 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 EXOC6BQ9Y2D4 811 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 SPEF2Q9C093 1822 aa10.62□□□□□ -0.71
NUP88-211ENST00000575976 LRRC37AA6NMS7 1700 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 UFL1O94874 794 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 SASH1O94885 1247 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 PDE8BO95263 885 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 TFCP2Q12800 502 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 OS9Q13438 667 aaPredicted RBP10.61□□□□□ -0.71
NUP88-211ENST00000575976 VGLL2Q8N8G2 317 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 KLRG1Q96E93 195 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 PSMD1Q99460 953 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 ZNF277Q9NRM2 450 aaPredicted RBP10.61□□□□□ -0.71
NUP88-211ENST00000575976 CEP126Q9P2H0 1117 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 GGA1Q9UJY5 639 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 LEMD3Q9Y2U8 911 aa10.61□□□□□ -0.71
NUP88-211ENST00000575976 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP10.61□□□□□ -0.71
NUP88-211ENST00000575976 ZNF804BA4D1E1 1349 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 LTBP3Q9NS15 1303 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 RIMBP2O15034 1052 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 IGHDP01880 384 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 KCNJ4P48050 445 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 HDAC1Q13547 482 aaPredicted RBP10.6□□□□□ -0.71
NUP88-211ENST00000575976 C16orf71Q8IYS4 520 aaPredicted RBP10.6□□□□□ -0.71
NUP88-211ENST00000575976 JMYQ8N9B5 988 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 SUPT20HQ8NEM7 779 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 DCTPP1Q9H773 170 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 WDR90Q96KV7 1748 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 DUOX1Q9NRD9 1551 aa10.6□□□□□ -0.71
NUP88-211ENST00000575976 APBB1O00213 710 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 FGFR2P21802 821 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 KLRK1P26718 216 aa10.59□□□□□ -0.71
NUP88-211ENST00000575976 IARSP41252 1262 aaKnown RBP10.59□□□□□ -0.71
NUP88-211ENST00000575976 UBE4AQ14139 1066 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms