RNA–Protein interactions for RNA: ENST00000575454.1

SMG6-218, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 652 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-218ENST00000575454 FAM89AQ96GI7 184 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 GGA3Q9NZ52 723 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 PODXL2Q9NZ53 605 aa11.74□□□□□ -0.53
SMG6-218ENST00000575454 ISCA1Q9BUE6 129 aa11.73□□□□□ -0.53
SMG6-218ENST00000575454 HYPKQ9NX55 129 aa11.73□□□□□ -0.53
SMG6-218ENST00000575454 ANKIB1Q9P2G1 1089 aa11.73□□□□□ -0.53
SMG6-218ENST00000575454 DBF4Q9UBU7 674 aaPredicted RBP11.73□□□□□ -0.53
SMG6-218ENST00000575454 HDAC9Q9UKV0 1011 aa11.73□□□□□ -0.53
SMG6-218ENST00000575454 CACNA1SQ13698 1873 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 RTL9Q8NET4 1388 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 CHL1O00533 1208 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 IRS4O14654 1257 aaPredicted RBP11.72□□□□□ -0.53
SMG6-218ENST00000575454 TMPOP42166 694 aaKnown RBP11.72□□□□□ -0.53
SMG6-218ENST00000575454 SCARF1Q14162 830 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 HDGFL1Q5TGJ6 251 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 RSBN1LQ6PCB5 846 aaPredicted RBP11.72□□□□□ -0.53
SMG6-218ENST00000575454 RASAL3Q86YV0 1011 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 KCNQ5Q9NR82 932 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 CHPF2Q9P2E5 772 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 GGA1Q9UJY5 639 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 HPS5Q9UPZ3 1129 aa11.72□□□□□ -0.53
SMG6-218ENST00000575454 PITPNM2Q9BZ72 1349 aa11.71□□□□□ -0.53
SMG6-218ENST00000575454 UFL1O94874 794 aa11.71□□□□□ -0.53
SMG6-218ENST00000575454 USP17L8P0C7I0 530 aa11.71□□□□□ -0.53
SMG6-218ENST00000575454 NOM1Q5C9Z4 860 aaKnown RBP11.71□□□□□ -0.53
SMG6-218ENST00000575454 ANGEL2Q5VTE6 544 aaKnown RBP11.71□□□□□ -0.53
SMG6-218ENST00000575454 ATP5J2-PTCD1G3V325 749 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 MMP14P50281 582 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 CCDC152Q4G0S7 254 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 PODNQ7Z5L7 613 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 ZBTB38Q8NAP3 1195 aaPredicted RBP11.7□□□□□ -0.54
SMG6-218ENST00000575454 GCC1Q96CN9 775 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 MYOZ2Q9NPC6 264 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 CASP8AP2Q9UKL3 1982 aa11.7□□□□□ -0.54
SMG6-218ENST00000575454 NF2P35240 595 aa11.69□□□□□ -0.54
SMG6-218ENST00000575454 RTL5Q5HYW3 569 aaPredicted RBP11.69□□□□□ -0.54
SMG6-218ENST00000575454 OGFOD1Q8N543 542 aa11.69□□□□□ -0.54
SMG6-218ENST00000575454 ZNF296Q8WUU4 475 aaPredicted RBP11.69□□□□□ -0.54
SMG6-218ENST00000575454 LAMB4A4D0S4 1761 aa11.69□□□□□ -0.54
SMG6-218ENST00000575454 ZNF609O15014 1411 aa11.69□□□□□ -0.54
SMG6-218ENST00000575454 XDHP47989 1333 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 USP17L3A6NCW0 530 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 USP17L4A6NCW7 530 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 TM4SF4P48230 202 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 GOLGA2Q08379 1002 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 SREBF2Q12772 1141 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 RALBP1Q15311 655 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 USP17L1Q7RTZ2 530 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 RIC3Q7Z5B4 369 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 GMLQ99445 158 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 CHMP4AQ9BY43 222 aa11.68□□□□□ -0.54
SMG6-218ENST00000575454 LAS1LQ9Y4W2 734 aaKnown RBP11.68□□□□□ -0.54
SMG6-218ENST00000575454 ASTN2O75129 1339 aaPredicted RBP11.67□□□□□ -0.54
SMG6-218ENST00000575454 TBC1D8O95759 1140 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 ATP2B4P23634 1241 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 TTLL12Q14166 644 aaPredicted RBP11.67□□□□□ -0.54
SMG6-218ENST00000575454 KRT24Q2M2I5 525 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 FBXO46Q6PJ61 603 aaPredicted RBP11.67□□□□□ -0.54
SMG6-218ENST00000575454 CCDC191Q8NCU4 936 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 ZNF428Q96B54 188 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 DUOX1Q9NRD9 1551 aa11.67□□□□□ -0.54
SMG6-218ENST00000575454 UBE2Q2LH0YL09 131 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 GPR25O00155 361 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 PDE8AO60658 829 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 ALDH1A1P00352 501 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 NEUROD2Q15784 382 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 ANKRD18AQ8IVF6 992 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 CFHR5Q9BXR6 569 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 SEC31BQ9NQW1 1179 aa11.66□□□□□ -0.54
SMG6-218ENST00000575454 MKI67P46013 3256 aaKnown RBP11.66□□□□□ -0.54
SMG6-218ENST00000575454 MYO3BQ8WXR4 1341 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 A0A0C4DFX4 3053 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 KDM3BQ7LBC6 1761 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 FKTNO75072 461 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 PCCAP05165 728 aaPredicted RBP11.65□□□□□ -0.54
SMG6-218ENST00000575454 INHBEP58166 350 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 DUSP27Q5VZP5 1158 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 ARMC9Q7Z3E5 817 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 RUNDC1Q96C34 613 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 CDC5LQ99459 802 aaKnown RBP11.65□□□□□ -0.54
SMG6-218ENST00000575454 TRPM7Q96QT4 1865 aa11.65□□□□□ -0.54
SMG6-218ENST00000575454 DDX58O95786 925 aaKnown RBP11.64□□□□□ -0.55
SMG6-218ENST00000575454 STRIP1Q5VSL9 837 aa11.64□□□□□ -0.55
SMG6-218ENST00000575454 INTS3Q68E01 1043 aaKnown RBP11.64□□□□□ -0.55
SMG6-218ENST00000575454 CWC25Q9NXE8 425 aaPredicted RBP11.64□□□□□ -0.55
SMG6-218ENST00000575454 TRIM35Q9UPQ4 493 aa11.64□□□□□ -0.55
SMG6-218ENST00000575454 NUP98P52948 1817 aa11.64□□□□□ -0.55
SMG6-218ENST00000575454 CUL9Q8IWT3 2517 aa11.63□□□□□ -0.55
SMG6-218ENST00000575454 CALD1Q05682 793 aaKnown RBP11.63□□□□□ -0.55
SMG6-218ENST00000575454 NBPF9Q3BBW0 867 aa11.63□□□□□ -0.55
SMG6-218ENST00000575454 MOB2Q70IA6 237 aa11.63□□□□□ -0.55
SMG6-218ENST00000575454 MYD88Q99836 296 aa11.63□□□□□ -0.55
SMG6-218ENST00000575454 COA1Q9GZY4 146 aa11.63□□□□□ -0.55
SMG6-218ENST00000575454 BSDC1Q9NW68 430 aaPredicted RBP11.63□□□□□ -0.55
SMG6-218ENST00000575454 UNCXA6NJT0 531 aa11.62□□□□□ -0.55
SMG6-218ENST00000575454 WNT10BO00744 389 aa11.62□□□□□ -0.55
SMG6-218ENST00000575454 WDR43Q15061 677 aaKnown RBP eCLIP11.62□□□□□ -0.55
SMG6-218ENST00000575454 DACT2Q5SW24 774 aa11.62□□□□□ -0.55
SMG6-218ENST00000575454 PRAMEF18Q5VWM3 479 aa11.62□□□□□ -0.55
SMG6-218ENST00000575454 APOBEC3FQ8IUX4 373 aaKnown RBP11.62□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms