RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 EYA2O00167 538 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 HMMRO75330 724 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 CCDC93Q567U6 631 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 KLHDC4Q8TBB5 520 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 WWC3Q9ULE0 1092 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 NOP58Q9Y2X3 529 aaKnown RBP22.62■■□□□ 1.21
CCDC40-213ENST00000574933 DUOX1Q9NRD9 1551 aa22.62■■□□□ 1.21
CCDC40-213ENST00000574933 RTKN2Q8IZC4 609 aa22.61■■□□□ 1.21
CCDC40-213ENST00000574933 PUS3Q9BZE2 481 aaKnown RBP22.61■■□□□ 1.21
CCDC40-213ENST00000574933 PODXL2Q9NZ53 605 aa22.61■■□□□ 1.21
CCDC40-213ENST00000574933 PA2G4Q9UQ80 394 aaKnown RBP22.61■■□□□ 1.21
CCDC40-213ENST00000574933 OLFM4Q6UX06 510 aa22.6■■□□□ 1.21
CCDC40-213ENST00000574933 ATG9AQ7Z3C6 839 aa22.6■■□□□ 1.21
CCDC40-213ENST00000574933 SLC51AQ86UW1 340 aa22.6■■□□□ 1.21
CCDC40-213ENST00000574933 TMX4Q9H1E5 349 aaPredicted RBP22.6■■□□□ 1.21
CCDC40-213ENST00000574933 CNNM1Q9NRU3 951 aa22.6■■□□□ 1.21
CCDC40-213ENST00000574933 CHD4Q14839 1912 aa22.6■■□□□ 1.21
CCDC40-213ENST00000574933 LTBP3Q9NS15 1303 aa22.59■■□□□ 1.21
CCDC40-213ENST00000574933 LRRC24Q50LG9 513 aa22.59■■□□□ 1.21
CCDC40-213ENST00000574933 RTFDC1Q9BY42 306 aaPredicted RBP22.59■■□□□ 1.21
CCDC40-213ENST00000574933 ANKRD2Q9GZV1 360 aa22.59■■□□□ 1.21
CCDC40-213ENST00000574933 MROH5Q6ZUA9 1318 aa22.58■■□□□ 1.21
CCDC40-213ENST00000574933 GRIN3BO60391 1043 aa22.58■■□□□ 1.21
CCDC40-213ENST00000574933 CHRNDQ07001 517 aa22.58■■□□□ 1.21
CCDC40-213ENST00000574933 GPR162Q16538 588 aa22.58■■□□□ 1.21
CCDC40-213ENST00000574933 PSMD1Q99460 953 aa22.58■■□□□ 1.21
CCDC40-213ENST00000574933 ZNF219Q9P2Y4 722 aaPredicted RBP22.58■■□□□ 1.21
CCDC40-213ENST00000574933 XDHP47989 1333 aa22.57■■□□□ 1.2
CCDC40-213ENST00000574933 IL15P40933 162 aaPredicted RBP22.57■■□□□ 1.2
CCDC40-213ENST00000574933 GPSM2P81274 684 aa22.57■■□□□ 1.2
CCDC40-213ENST00000574933 MPNDQ8N594 471 aa22.57■■□□□ 1.2
CCDC40-213ENST00000574933 VGLL2Q8N8G2 317 aa22.57■■□□□ 1.2
CCDC40-213ENST00000574933 NEFLP07196 543 aa22.56■■□□□ 1.2
CCDC40-213ENST00000574933 HDAC1Q13547 482 aaPredicted RBP22.56■■□□□ 1.2
CCDC40-213ENST00000574933 GOLGB1Q14789 3259 aaKnown RBP22.55■■□□□ 1.2
CCDC40-213ENST00000574933 ARAP2Q8WZ64 1704 aa22.55■■□□□ 1.2
CCDC40-213ENST00000574933 NFKBIEO00221 500 aa22.55■■□□□ 1.2
CCDC40-213ENST00000574933 FKBP4Q02790 459 aaKnown RBP eCLIP22.55■■□□□ 1.2
CCDC40-213ENST00000574933 PELP1Q8IZL8 1130 aaKnown RBP22.55■■□□□ 1.2
CCDC40-213ENST00000574933 SIL1Q9H173 461 aa22.55■■□□□ 1.2
CCDC40-213ENST00000574933 NSFL1CQ9UNZ2 370 aaKnown RBP22.55■■□□□ 1.2
CCDC40-213ENST00000574933 SURF6O75683 361 aaKnown RBP22.54■■□□□ 1.2
CCDC40-213ENST00000574933 ATP2B4P23634 1241 aa22.54■■□□□ 1.2
CCDC40-213ENST00000574933 G3BP1Q13283 466 aaKnown RBP eCLIP22.54■■□□□ 1.2
CCDC40-213ENST00000574933 HSP90AB4PQ58FF6 505 aa22.54■■□□□ 1.2
CCDC40-213ENST00000574933 DPP8Q6V1X1 898 aaPredicted RBP22.54■■□□□ 1.2
CCDC40-213ENST00000574933 VPS33BQ9H267 617 aa22.54■■□□□ 1.2
CCDC40-213ENST00000574933 DCTPP1Q9H773 170 aa22.54■■□□□ 1.2
CCDC40-213ENST00000574933 LEMD3Q9Y2U8 911 aa22.54■■□□□ 1.2
CCDC40-213ENST00000574933 PDE8BO95263 885 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 METTL24Q5JXM2 366 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 ERICH6BQ5W0A0 696 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 SUPT20HQ8NEM7 779 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 TBC1D16Q8TBP0 767 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 TAOK3Q9H2K8 898 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 ANKIB1Q9P2G1 1089 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 POLLQ9UGP5 575 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 GGA1Q9UJY5 639 aa22.53■■□□□ 1.2
CCDC40-213ENST00000574933 UBE4AQ14139 1066 aa22.52■■□□□ 1.2
CCDC40-213ENST00000574933 ARHGAP27Q6ZUM4 889 aa22.52■■□□□ 1.2
CCDC40-213ENST00000574933 CEP126Q9P2H0 1117 aa22.52■■□□□ 1.2
CCDC40-213ENST00000574933 DCAF8L1A6NGE4 600 aa22.51■■□□□ 1.19
CCDC40-213ENST00000574933 SASH1O94885 1247 aa22.51■■□□□ 1.19
CCDC40-213ENST00000574933 C15orf52Q6ZUT6 534 aaKnown RBP22.51■■□□□ 1.19
CCDC40-213ENST00000574933 ERC1Q8IUD2 1116 aa22.51■■□□□ 1.19
CCDC40-213ENST00000574933 HELBQ8NG08 1087 aaPredicted RBP22.51■■□□□ 1.19
CCDC40-213ENST00000574933 EXOC6BQ9Y2D4 811 aa22.51■■□□□ 1.19
CCDC40-213ENST00000574933 PSME4Q14997 1843 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 RAB11FIP3O75154 756 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 TAF5LO75529 589 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 FGFR2P21802 821 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 RWDD1Q9H446 243 aaPredicted RBP22.5■■□□□ 1.19
CCDC40-213ENST00000574933 ZNF804BA4D1E1 1349 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 IRS2Q9Y4H2 1338 aa22.5■■□□□ 1.19
CCDC40-213ENST00000574933 UFL1O94874 794 aa22.49■■□□□ 1.19
CCDC40-213ENST00000574933 EYA3Q99504 573 aa22.49■■□□□ 1.19
CCDC40-213ENST00000574933 GPR108Q9NPR9 543 aa22.49■■□□□ 1.19
CCDC40-213ENST00000574933 MED23Q9ULK4 1368 aa22.49■■□□□ 1.19
CCDC40-213ENST00000574933 PRELPP51888 382 aa22.48■■□□□ 1.19
CCDC40-213ENST00000574933 RASSF7Q02833 373 aa22.48■■□□□ 1.19
CCDC40-213ENST00000574933 KIAA2012Q0VF49 1180 aa22.48■■□□□ 1.19
CCDC40-213ENST00000574933 TFCP2Q12800 502 aa22.48■■□□□ 1.19
CCDC40-213ENST00000574933 PUM3Q15397 648 aaKnown RBP22.48■■□□□ 1.19
CCDC40-213ENST00000574933 MYH13Q9UKX3 1938 aa22.48■■□□□ 1.19
CCDC40-213ENST00000574933 WTIPA6NIX2 430 aaPredicted RBP22.47■■□□□ 1.19
CCDC40-213ENST00000574933 C6orf229H3BNL8 230 aa22.47■■□□□ 1.19
CCDC40-213ENST00000574933 OS9Q13438 667 aaPredicted RBP22.47■■□□□ 1.19
CCDC40-213ENST00000574933 RHPN1Q8TCX5 695 aa22.47■■□□□ 1.19
CCDC40-213ENST00000574933 KIF1BPQ96EK5 621 aa22.47■■□□□ 1.19
CCDC40-213ENST00000574933 AKAP2Q9Y2D5 859 aa22.47■■□□□ 1.19
CCDC40-213ENST00000574933 TIAM2Q8IVF5 1701 aa22.47■■□□□ 1.19
CCDC40-213ENST00000574933 LMNB1P20700 586 aa22.46■■□□□ 1.19
CCDC40-213ENST00000574933 IARSP41252 1262 aaKnown RBP22.46■■□□□ 1.19
CCDC40-213ENST00000574933 LPIN2Q92539 896 aa22.46■■□□□ 1.19
CCDC40-213ENST00000574933 GCC1Q96CN9 775 aa22.46■■□□□ 1.19
CCDC40-213ENST00000574933 ZNF277Q9NRM2 450 aaPredicted RBP22.46■■□□□ 1.19
CCDC40-213ENST00000574933 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22.46■■□□□ 1.19
CCDC40-213ENST00000574933 SCN9AQ15858 1988 aa22.46■■□□□ 1.19
CCDC40-213ENST00000574933 ZNF609O15014 1411 aa22.46■■□□□ 1.19
CCDC40-213ENST00000574933 COL4A5P29400 1685 aa22.46■■□□□ 1.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms