RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 PA2G4Q9UQ80 394 aaKnown RBP21.21■□□□□ 0.99
NUP88-210ENST00000574867 SNED1Q8TER0 1413 aa21.21■□□□□ 0.99
NUP88-210ENST00000574867 MINPP1Q9UNW1 487 aa21.2■□□□□ 0.99
NUP88-210ENST00000574867 MROH5Q6ZUA9 1318 aa21.2■□□□□ 0.98
NUP88-210ENST00000574867 RTKN2Q8IZC4 609 aa21.2■□□□□ 0.98
NUP88-210ENST00000574867 ANKRD2Q9GZV1 360 aa21.2■□□□□ 0.98
NUP88-210ENST00000574867 SIL1Q9H173 461 aa21.2■□□□□ 0.98
NUP88-210ENST00000574867 ZNF219Q9P2Y4 722 aaPredicted RBP21.2■□□□□ 0.98
NUP88-210ENST00000574867 FER1L6Q2WGJ9 1857 aa21.2■□□□□ 0.98
NUP88-210ENST00000574867 IL15P40933 162 aaPredicted RBP21.19■□□□□ 0.98
NUP88-210ENST00000574867 PELP1Q8IZL8 1130 aaKnown RBP21.19■□□□□ 0.98
NUP88-210ENST00000574867 PUS3Q9BZE2 481 aaKnown RBP21.19■□□□□ 0.98
NUP88-210ENST00000574867 NOP58Q9Y2X3 529 aaKnown RBP21.19■□□□□ 0.98
NUP88-210ENST00000574867 RIPOR2Q9Y4F9 1068 aa21.19■□□□□ 0.98
NUP88-210ENST00000574867 LRRC24Q50LG9 513 aa21.19■□□□□ 0.98
NUP88-210ENST00000574867 XDHP47989 1333 aa21.19■□□□□ 0.98
NUP88-210ENST00000574867 SURF6O75683 361 aaKnown RBP21.18■□□□□ 0.98
NUP88-210ENST00000574867 YBX3P16989 372 aaKnown RBP eCLIP21.18■□□□□ 0.98
NUP88-210ENST00000574867 CHRNDQ07001 517 aa21.18■□□□□ 0.98
NUP88-210ENST00000574867 HDAC1Q13547 482 aaPredicted RBP21.18■□□□□ 0.98
NUP88-210ENST00000574867 GPR162Q16538 588 aa21.18■□□□□ 0.98
NUP88-210ENST00000574867 HSP90AB4PQ58FF6 505 aa21.18■□□□□ 0.98
NUP88-210ENST00000574867 PODXL2Q9NZ53 605 aa21.18■□□□□ 0.98
NUP88-210ENST00000574867 G3BP1Q13283 466 aaKnown RBP eCLIP21.17■□□□□ 0.98
NUP88-210ENST00000574867 OLFM4Q6UX06 510 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 ATG9AQ7Z3C6 839 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 ANKIB1Q9P2G1 1089 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 DUOX1Q9NRD9 1551 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 ERICH6BQ5W0A0 696 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 MPNDQ8N594 471 aa21.17■□□□□ 0.98
NUP88-210ENST00000574867 GPSM2P81274 684 aa21.16■□□□□ 0.98
NUP88-210ENST00000574867 METTL24Q5JXM2 366 aa21.16■□□□□ 0.98
NUP88-210ENST00000574867 DPP8Q6V1X1 898 aaPredicted RBP21.16■□□□□ 0.98
NUP88-210ENST00000574867 SLC51AQ86UW1 340 aa21.16■□□□□ 0.98
NUP88-210ENST00000574867 NSFL1CQ9UNZ2 370 aaKnown RBP21.16■□□□□ 0.98
NUP88-210ENST00000574867 GRIN3BO60391 1043 aa21.16■□□□□ 0.98
NUP88-210ENST00000574867 OS9Q13438 667 aaPredicted RBP21.16■□□□□ 0.98
NUP88-210ENST00000574867 PSMD1Q99460 953 aa21.16■□□□□ 0.98
NUP88-210ENST00000574867 LTBP3Q9NS15 1303 aa21.15■□□□□ 0.98
NUP88-210ENST00000574867 ERC1Q8IUD2 1116 aa21.15■□□□□ 0.98
NUP88-210ENST00000574867 RWDD1Q9H446 243 aaPredicted RBP21.15■□□□□ 0.98
NUP88-210ENST00000574867 SUPT20HQ8NEM7 779 aa21.14■□□□□ 0.98
NUP88-210ENST00000574867 RTFDC1Q9BY42 306 aaPredicted RBP21.14■□□□□ 0.98
NUP88-210ENST00000574867 GGA1Q9UJY5 639 aa21.14■□□□□ 0.98
NUP88-210ENST00000574867 EXOC6BQ9Y2D4 811 aa21.14■□□□□ 0.98
NUP88-210ENST00000574867 DCAF8L1A6NGE4 600 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 ATP2B4P23634 1241 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 FKBP4Q02790 459 aaKnown RBP eCLIP21.14■□□□□ 0.97
NUP88-210ENST00000574867 VGLL2Q8N8G2 317 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 TAOK3Q9H2K8 898 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 CEP126Q9P2H0 1117 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 LEMD3Q9Y2U8 911 aa21.14■□□□□ 0.97
NUP88-210ENST00000574867 PDE8BO95263 885 aa21.13■□□□□ 0.97
NUP88-210ENST00000574867 DCTPP1Q9H773 170 aa21.13■□□□□ 0.97
NUP88-210ENST00000574867 RAB11FIP3O75154 756 aa21.13■□□□□ 0.97
NUP88-210ENST00000574867 GOLGB1Q14789 3259 aaKnown RBP21.12■□□□□ 0.97
NUP88-210ENST00000574867 NFKBIEO00221 500 aa21.12■□□□□ 0.97
NUP88-210ENST00000574867 UFL1O94874 794 aa21.12■□□□□ 0.97
NUP88-210ENST00000574867 KCNJ4P48050 445 aa21.12■□□□□ 0.97
NUP88-210ENST00000574867 HELBQ8NG08 1087 aaPredicted RBP21.12■□□□□ 0.97
NUP88-210ENST00000574867 TBC1D16Q8TBP0 767 aa21.12■□□□□ 0.97
NUP88-210ENST00000574867 TAF5LO75529 589 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 ARHGAP27Q6ZUM4 889 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 ZNF804BA4D1E1 1349 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 SASH1O94885 1247 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 UBE4AQ14139 1066 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 PUM3Q15397 648 aaKnown RBP21.11■□□□□ 0.97
NUP88-210ENST00000574867 EYA3Q99504 573 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 POLLQ9UGP5 575 aa21.11■□□□□ 0.97
NUP88-210ENST00000574867 C6orf229H3BNL8 230 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 TFCP2Q12800 502 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 ARAP2Q8WZ64 1704 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 GCC1Q96CN9 775 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 KIF1BPQ96EK5 621 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 VPS33BQ9H267 617 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 AKAP2Q9Y2D5 859 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 MED23Q9ULK4 1368 aa21.1■□□□□ 0.97
NUP88-210ENST00000574867 ZNF609O15014 1411 aa21.09■□□□□ 0.97
NUP88-210ENST00000574867 RHPN1Q8TCX5 695 aa21.08■□□□□ 0.97
NUP88-210ENST00000574867 GPR108Q9NPR9 543 aa21.08■□□□□ 0.97
NUP88-210ENST00000574867 RASSF7Q02833 373 aa21.08■□□□□ 0.96
NUP88-210ENST00000574867 ATP2B3Q16720 1220 aa21.08■□□□□ 0.96
NUP88-210ENST00000574867 LPIN2Q92539 896 aa21.08■□□□□ 0.96
NUP88-210ENST00000574867 IGHDP01880 384 aa21.07■□□□□ 0.96
NUP88-210ENST00000574867 FGFR2P21802 821 aa21.07■□□□□ 0.96
NUP88-210ENST00000574867 C15orf52Q6ZUT6 534 aaKnown RBP21.07■□□□□ 0.96
NUP88-210ENST00000574867 LRRCC1Q9C099 1032 aa21.07■□□□□ 0.96
NUP88-210ENST00000574867 IFIT1P09914 478 aaKnown RBP21.06■□□□□ 0.96
NUP88-210ENST00000574867 SLC5A1P13866 664 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 WASHC4Q2M389 1173 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 SBF1O95248 1867 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 APBB1O00213 710 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 IARSP41252 1262 aaKnown RBP21.06■□□□□ 0.96
NUP88-210ENST00000574867 KIAA2012Q0VF49 1180 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 SMC5Q8IY18 1101 aa21.06■□□□□ 0.96
NUP88-210ENST00000574867 ZNF277Q9NRM2 450 aaPredicted RBP21.06■□□□□ 0.96
NUP88-210ENST00000574867 LMNB1P20700 586 aa21.05■□□□□ 0.96
NUP88-210ENST00000574867 ZC3H12CQ9C0D7 883 aaKnown RBP21.05■□□□□ 0.96
NUP88-210ENST00000574867 DICER1Q9UPY3 1922 aaKnown RBP21.05■□□□□ 0.96
NUP88-210ENST00000574867 CCDC88AQ3V6T2 1871 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 36.9 ms