RNA–Protein interactions for RNA: ENST00000573936.5

CHD3-216, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 749 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-216ENST00000573936 MPNDQ8N594 471 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 AIDAQ96BJ3 306 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 VPS33BQ9H267 617 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 CHMP3Q9Y3E7 222 aa13.84□□□□□ -0.19
CHD3-216ENST00000573936 CCDC57Q2TAC2 916 aa13.83□□□□□ -0.2
CHD3-216ENST00000573936 DPP8Q6V1X1 898 aaPredicted RBP13.83□□□□□ -0.2
CHD3-216ENST00000573936 BSDC1Q9NW68 430 aaPredicted RBP13.83□□□□□ -0.2
CHD3-216ENST00000573936 IQCA1LA6NCM1 817 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 DDNO94850 711 aaPredicted RBP13.82□□□□□ -0.2
CHD3-216ENST00000573936 FAM161AQ3B820 660 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 RABL6Q3YEC7 729 aaPredicted RBP13.82□□□□□ -0.2
CHD3-216ENST00000573936 TAF7LQ5H9L4 462 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 EPHA10Q5JZY3 1008 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 OLFM4Q6UX06 510 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 TMEM57Q8N5G2 664 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 MPHOSPH8Q99549 860 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 BICC1Q9H694 974 aaKnown RBP13.82□□□□□ -0.2
CHD3-216ENST00000573936 TNNQ9UQP3 1299 aa13.82□□□□□ -0.2
CHD3-216ENST00000573936 POTEIP0CG38 1075 aa13.81□□□□□ -0.2
CHD3-216ENST00000573936 POTEJP0CG39 1038 aa13.81□□□□□ -0.2
CHD3-216ENST00000573936 KAZALD1Q96I82 304 aa13.81□□□□□ -0.2
CHD3-216ENST00000573936 RTFDC1Q9BY42 306 aaPredicted RBP13.81□□□□□ -0.2
CHD3-216ENST00000573936 ZNF277Q9NRM2 450 aaPredicted RBP13.81□□□□□ -0.2
CHD3-216ENST00000573936 MYH3P11055 1940 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 SLC34A2O95436 690 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 IARSP41252 1262 aaKnown RBP13.8□□□□□ -0.2
CHD3-216ENST00000573936 ITPRIPQ8IWB1 547 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 MEIS3Q99687 375 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 CHMP4BQ9H444 224 aaKnown RBP13.8□□□□□ -0.2
CHD3-216ENST00000573936 PODXL2Q9NZ53 605 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 NSFL1CQ9UNZ2 370 aaKnown RBP13.8□□□□□ -0.2
CHD3-216ENST00000573936 CLEC11AQ9Y240 323 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 SNED1Q8TER0 1413 aa13.8□□□□□ -0.2
CHD3-216ENST00000573936 GNAI2P04899 355 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 PDE3AQ14432 1141 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 ANKRD44Q8N8A2 993 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 EYA3Q99504 573 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 ANKRD2Q9GZV1 360 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 ANKIB1Q9P2G1 1089 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 MINPP1Q9UNW1 487 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 ZNF541Q9H0D2 1346 aa13.79□□□□□ -0.2
CHD3-216ENST00000573936 SCN4AP35499 1836 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 RLBP1P12271 317 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 ATP2B4P23634 1241 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 CTCFP49711 727 aaPredicted RBP13.78□□□□□ -0.2
CHD3-216ENST00000573936 GPSM2P81274 684 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 EAPPQ56P03 285 aaPredicted RBP13.78□□□□□ -0.2
CHD3-216ENST00000573936 LDHAL6AQ6ZMR3 332 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 LDHDQ86WU2 507 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 JDP2Q8WYK2 163 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 GGA1Q9UJY5 639 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 LRRFIP2Q9Y608 721 aaKnown RBP13.78□□□□□ -0.2
CHD3-216ENST00000573936 XDHP47989 1333 aa13.78□□□□□ -0.2
CHD3-216ENST00000573936 TMEM88BA6NKF7 163 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 C6orf229H3BNL8 230 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 FOXN1O15353 648 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 PLIN1O60240 522 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 WASHC4Q2M389 1173 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 LARGE2Q8N3Y3 721 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 PANK1Q8TE04 598 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 PRDM10Q9NQV6 1147 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 CNNM1Q9NRU3 951 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 LEMD3Q9Y2U8 911 aa13.77□□□□□ -0.21
CHD3-216ENST00000573936 CNTNAP1P78357 1384 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 ZBTB7BO15156 539 aaPredicted RBP13.76□□□□□ -0.21
CHD3-216ENST00000573936 PPIP5K2O43314 1243 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 MVPQ14764 893 aaKnown RBP13.76□□□□□ -0.21
CHD3-216ENST00000573936 NIM1KQ8IY84 436 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 TBC1D16Q8TBP0 767 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 L3MBTL3Q96JM7 780 aaPredicted RBP13.76□□□□□ -0.21
CHD3-216ENST00000573936 ZC3H12CQ9C0D7 883 aaKnown RBP13.76□□□□□ -0.21
CHD3-216ENST00000573936 TAF1DQ9H5J8 278 aaPredicted RBP13.76□□□□□ -0.21
CHD3-216ENST00000573936 POLLQ9UGP5 575 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 DDX19BQ9UMR2 479 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 TAF1P21675 1872 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 LRRC37AA6NMS7 1700 aa13.76□□□□□ -0.21
CHD3-216ENST00000573936 UFL1O94874 794 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 CHRNDQ07001 517 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 KIAA2012Q0VF49 1180 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 AOC3Q16853 763 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 SLC51AQ86UW1 340 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 ZNF594Q96JF6 807 aaPredicted RBP13.75□□□□□ -0.21
CHD3-216ENST00000573936 HACL1Q9UJ83 578 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 FBXO3Q9UK99 471 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 COL4A5P29400 1685 aa13.75□□□□□ -0.21
CHD3-216ENST00000573936 ADAMTSL1Q8N6G6 1762 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 MROH5Q6ZUA9 1318 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 G3V3G9 751 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 KCNJ4P48050 445 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 VEGFBP49765 207 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 EIF6P56537 245 aaKnown RBP13.74□□□□□ -0.21
CHD3-216ENST00000573936 MTX1Q13505 466 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 DCAF8Q5TAQ9 597 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 PNMA8AQ86V59 439 aaPredicted RBP13.74□□□□□ -0.21
CHD3-216ENST00000573936 COG6Q9Y2V7 657 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 COL4A1P02462 1669 aa13.74□□□□□ -0.21
CHD3-216ENST00000573936 PASKQ96RG2 1323 aa13.73□□□□□ -0.21
CHD3-216ENST00000573936 FZD9O00144 591 aa13.73□□□□□ -0.21
CHD3-216ENST00000573936 RFX5P48382 616 aaPredicted RBP13.73□□□□□ -0.21
CHD3-216ENST00000573936 RRP1P56182 461 aaKnown RBP13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms