RNA–Protein interactions for RNA: ENST00000573309.5

CIITA-209, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best)

Gene CIITA, Length 3,366 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-209ENST00000573309 USP54Q70EL1 1684 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 FOXO4P98177 505 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 WTIPA6NIX2 430 aaPredicted RBP14.36□□□□□ -0.11
CIITA-209ENST00000573309 TAF5LO75529 589 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 ADORA1P30542 326 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 GIMAP6Q6P9H5 292 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 CNTROBQ8N137 903 aa14.36□□□□□ -0.11
CIITA-209ENST00000573309 SRP68Q9UHB9 627 aaKnown RBP14.36□□□□□ -0.11
CIITA-209ENST00000573309 SPATA31A5Q5VU36 1347 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 SPATA31A7Q8IWB4 1347 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 GOLIM4O00461 696 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 PTH1RQ03431 593 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 HSP90AB4PQ58FF6 505 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 BBXQ8WY36 941 aaPredicted RBP14.35□□□□□ -0.11
CIITA-209ENST00000573309 RPAP1Q9BWH6 1393 aaPredicted RBP14.35□□□□□ -0.11
CIITA-209ENST00000573309 SLC51AQ86UW1 340 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 STK11IPQ8N1F8 1099 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 SEC31BQ9NQW1 1179 aa14.35□□□□□ -0.11
CIITA-209ENST00000573309 SALL3Q9BXA9 1300 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 CNNM1Q9NRU3 951 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 NIP7Q9Y221 180 aaKnown RBP eCLIP14.34□□□□□ -0.11
CIITA-209ENST00000573309 C5P01031 1676 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 IRS4O14654 1257 aaPredicted RBP14.34□□□□□ -0.11
CIITA-209ENST00000573309 CTIFO43310 598 aaKnown RBP14.34□□□□□ -0.11
CIITA-209ENST00000573309 PRPF40BQ6NWY9 871 aaKnown RBP14.34□□□□□ -0.11
CIITA-209ENST00000573309 FUCA2Q9BTY2 467 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 OSBPL3Q9H4L5 887 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 KDM3BQ7LBC6 1761 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 WDR33Q9C0J8 1336 aaKnown RBP14.34□□□□□ -0.11
CIITA-209ENST00000573309 TNNI3KQ59H18 835 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 FPGT-TNNI3KV9GXZ4 949 aa14.34□□□□□ -0.11
CIITA-209ENST00000573309 NMIQ13287 307 aaPredicted RBP14.33□□□□□ -0.11
CIITA-209ENST00000573309 LDHAL6AQ6ZMR3 332 aa14.33□□□□□ -0.11
CIITA-209ENST00000573309 H7C1W4 665 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 GLRX3O76003 335 aaKnown RBP14.33□□□□□ -0.12
CIITA-209ENST00000573309 RFX5P48382 616 aaPredicted RBP14.33□□□□□ -0.12
CIITA-209ENST00000573309 RASEFQ8IZ41 740 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 TMEM87AQ8NBN3 555 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 TAF6LQ9Y6J9 622 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 A0A0D9SFI3 127 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 NLRP10Q86W26 655 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 AMIGO3Q86WK7 504 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 GPATCH3Q96I76 525 aa14.33□□□□□ -0.12
CIITA-209ENST00000573309 ITGA6P23229 1130 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 NAA30Q147X3 362 aaPredicted RBP14.32□□□□□ -0.12
CIITA-209ENST00000573309 SUSD4Q5VX71 490 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 CERKQ8TCT0 537 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 JAG2Q9Y219 1238 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 AFF2P51816 1311 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 CASP7P55210 303 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 NCBP1Q09161 790 aaKnown RBP14.32□□□□□ -0.12
CIITA-209ENST00000573309 IFIT5Q13325 482 aaKnown RBP14.32□□□□□ -0.12
CIITA-209ENST00000573309 PALLDQ8WX93 1383 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 MAP3K15Q6ZN16 1313 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 UBN2Q6ZU65 1347 aa14.32□□□□□ -0.12
CIITA-209ENST00000573309 METTL24Q5JXM2 366 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 GIGYF2Q6Y7W6 1299 aaKnown RBP14.31□□□□□ -0.12
CIITA-209ENST00000573309 CCDC191Q8NCU4 936 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 CCDC87Q9NVE4 849 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 ZBTB22O15209 634 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 GNPATO15228 680 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 NAP1L2Q9ULW6 460 aaPredicted RBP14.31□□□□□ -0.12
CIITA-209ENST00000573309 A0A1B0GUL7 405 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 FIBPO43427 364 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 CHAF1AQ13111 956 aaPredicted RBP14.31□□□□□ -0.12
CIITA-209ENST00000573309 MTX1Q13505 466 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 INTS5Q6P9B9 1019 aaKnown RBP14.31□□□□□ -0.12
CIITA-209ENST00000573309 ZNF589Q86UQ0 364 aaPredicted RBP14.31□□□□□ -0.12
CIITA-209ENST00000573309 ERC1Q8IUD2 1116 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 CEP126Q9P2H0 1117 aa14.31□□□□□ -0.12
CIITA-209ENST00000573309 LINC00116Q8NCU8 138 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 LRRC2Q9BYS8 371 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 TMEM51Q9NW97 253 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 STAP2Q9UGK3 403 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 LTBP4Q8N2S1 1624 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 BCL9O00512 1426 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 UBE2HP62256 183 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 ZNF771Q7L3S4 317 aaPredicted RBP14.3□□□□□ -0.12
CIITA-209ENST00000573309 CGNQ9P2M7 1197 aaKnown RBP14.3□□□□□ -0.12
CIITA-209ENST00000573309 HDAC5Q9UQL6 1122 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 SCN11AQ9UI33 1791 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 A0A0G2JLW4 131 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 PTGS1P23219 599 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 ANAPC15P60006 121 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 ADCK5Q3MIX3 580 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 ATG9AQ7Z3C6 839 aa14.3□□□□□ -0.12
CIITA-209ENST00000573309 ZSCAN22P10073 491 aaPredicted RBP14.29□□□□□ -0.12
CIITA-209ENST00000573309 SCARF1Q14162 830 aa14.29□□□□□ -0.12
CIITA-209ENST00000573309 BCL11BQ9C0K0 894 aaPredicted RBP14.29□□□□□ -0.12
CIITA-209ENST00000573309 QTRT2Q9H974 415 aaKnown RBP14.29□□□□□ -0.12
CIITA-209ENST00000573309 OGFRQ9NZT2 677 aa14.29□□□□□ -0.12
CIITA-209ENST00000573309 FOSBP53539 338 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 SEPT12Q8IYM1 358 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 ISCA1Q9BUE6 129 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 CTNNA3Q9UI47 895 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 EYA2O00167 538 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 TRIM37O94972 964 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 SYT1P21579 422 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 USPL1Q5W0Q7 1092 aa14.28□□□□□ -0.12
CIITA-209ENST00000573309 TEX13AQ9BXU3 409 aaPredicted RBP14.28□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms