RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 GPR101Q96P66 508 aaPredicted RBP25.49■■□□□ 1.67
NUP88-204ENST00000572290 POTEIP0CG38 1075 aa25.48■■□□□ 1.67
NUP88-204ENST00000572290 POTEJP0CG39 1038 aa25.48■■□□□ 1.67
NUP88-204ENST00000572290 LMOD1P29536 600 aaPredicted RBP25.48■■□□□ 1.67
NUP88-204ENST00000572290 APLP1P51693 650 aa25.48■■□□□ 1.67
NUP88-204ENST00000572290 ZC3H12CQ9C0D7 883 aaKnown RBP25.48■■□□□ 1.67
NUP88-204ENST00000572290 YDJCA8MPS7 323 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 RAD17O75943 681 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 ATP2B4P23634 1241 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 SCNN1DP51172 638 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 TNIP1Q15025 636 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 EAPPQ56P03 285 aaPredicted RBP25.47■■□□□ 1.67
NUP88-204ENST00000572290 CHADLQ6NUI6 762 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 DBNDD1Q9H9R9 158 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 MINPP1Q9UNW1 487 aa25.47■■□□□ 1.67
NUP88-204ENST00000572290 ANKRD18BA2A2Z9 1011 aa25.46■■□□□ 1.67
NUP88-204ENST00000572290 PNMA8AQ86V59 439 aaPredicted RBP25.46■■□□□ 1.67
NUP88-204ENST00000572290 LDHDQ86WU2 507 aa25.46■■□□□ 1.67
NUP88-204ENST00000572290 MPHOSPH8Q99549 860 aa25.46■■□□□ 1.67
NUP88-204ENST00000572290 CHMP3Q9Y3E7 222 aa25.46■■□□□ 1.67
NUP88-204ENST00000572290 DOK7Q18PE1 504 aa25.45■■□□□ 1.66
NUP88-204ENST00000572290 EPHA10Q5JZY3 1008 aa25.45■■□□□ 1.66
NUP88-204ENST00000572290 LMBR1LQ6UX01 489 aa25.45■■□□□ 1.66
NUP88-204ENST00000572290 ECE2O60344 883 aa25.44■■□□□ 1.66
NUP88-204ENST00000572290 IFIT5Q13325 482 aaKnown RBP25.44■■□□□ 1.66
NUP88-204ENST00000572290 G3V3G9 751 aa25.43■■□□□ 1.66
NUP88-204ENST00000572290 NBPF7P0C2Y1 421 aaPredicted RBP25.43■■□□□ 1.66
NUP88-204ENST00000572290 EPS15P42566 896 aa25.43■■□□□ 1.66
NUP88-204ENST00000572290 GMPSP49915 693 aaPredicted RBP25.43■■□□□ 1.66
NUP88-204ENST00000572290 RARSP54136 660 aaKnown RBP25.43■■□□□ 1.66
NUP88-204ENST00000572290 BRPF1P55201 1214 aaPredicted RBP25.43■■□□□ 1.66
NUP88-204ENST00000572290 DCAF8Q5TAQ9 597 aa25.43■■□□□ 1.66
NUP88-204ENST00000572290 SUCLG2Q96I99 432 aa25.43■■□□□ 1.66
NUP88-204ENST00000572290 CLEC11AQ9Y240 323 aa25.43■■□□□ 1.66
NUP88-204ENST00000572290 UTYO14607 1347 aa25.42■■□□□ 1.66
NUP88-204ENST00000572290 GPRC5DQ9NZD1 345 aa25.42■■□□□ 1.66
NUP88-204ENST00000572290 NOB1Q9ULX3 412 aaKnown RBP25.42■■□□□ 1.66
NUP88-204ENST00000572290 LTBP1Q14766 1721 aa25.42■■□□□ 1.66
NUP88-204ENST00000572290 CCT4P50991 539 aaKnown RBP25.41■■□□□ 1.66
NUP88-204ENST00000572290 CCDC57Q2TAC2 916 aa25.41■■□□□ 1.66
NUP88-204ENST00000572290 ANKRD2Q9GZV1 360 aa25.41■■□□□ 1.66
NUP88-204ENST00000572290 SCN4AP35499 1836 aa25.4■■□□□ 1.66
NUP88-204ENST00000572290 API5Q9BZZ5 524 aaKnown RBP25.4■■□□□ 1.66
NUP88-204ENST00000572290 LEMD3Q9Y2U8 911 aa25.4■■□□□ 1.66
NUP88-204ENST00000572290 PSMD14O00487 310 aa25.39■■□□□ 1.66
NUP88-204ENST00000572290 TAF7LQ5H9L4 462 aa25.39■■□□□ 1.66
NUP88-204ENST00000572290 USP50Q70EL3 339 aaPredicted RBP25.39■■□□□ 1.66
NUP88-204ENST00000572290 KAZALD1Q96I82 304 aa25.39■■□□□ 1.66
NUP88-204ENST00000572290 ADARB2Q9NS39 739 aaKnown RBP25.39■■□□□ 1.66
NUP88-204ENST00000572290 WTIPA6NIX2 430 aaPredicted RBP25.38■■□□□ 1.65
NUP88-204ENST00000572290 CHRNDQ07001 517 aa25.38■■□□□ 1.65
NUP88-204ENST00000572290 KCNQ5Q9NR82 932 aa25.38■■□□□ 1.65
NUP88-204ENST00000572290 MED23Q9ULK4 1368 aa25.37■■□□□ 1.65
NUP88-204ENST00000572290 HTRA3P83110 453 aa25.37■■□□□ 1.65
NUP88-204ENST00000572290 USP44Q9H0E7 712 aa25.37■■□□□ 1.65
NUP88-204ENST00000572290 ZBTB12Q9Y330 459 aaPredicted RBP25.37■■□□□ 1.65
NUP88-204ENST00000572290 ZNF594Q96JF6 807 aaPredicted RBP25.36■■□□□ 1.65
NUP88-204ENST00000572290 ZNF804BA4D1E1 1349 aa25.36■■□□□ 1.65
NUP88-204ENST00000572290 KIF16BQ96L93 1317 aa25.36■■□□□ 1.65
NUP88-204ENST00000572290 MAP1SQ66K74 1059 aaPredicted RBP25.35■■□□□ 1.65
NUP88-204ENST00000572290 LDHAL6AQ6ZMR3 332 aa25.35■■□□□ 1.65
NUP88-204ENST00000572290 PODNQ7Z5L7 613 aa25.35■■□□□ 1.65
NUP88-204ENST00000572290 DPF2Q92785 391 aa25.35■■□□□ 1.65
NUP88-204ENST00000572290 BICC1Q9H694 974 aaKnown RBP25.35■■□□□ 1.65
NUP88-204ENST00000572290 CNOT7Q9UIV1 285 aaKnown RBP25.35■■□□□ 1.65
NUP88-204ENST00000572290 MYH3P11055 1940 aa25.35■■□□□ 1.65
NUP88-204ENST00000572290 RPS12P25398 132 aaKnown RBP25.34■■□□□ 1.65
NUP88-204ENST00000572290 KCNJ4P48050 445 aa25.34■■□□□ 1.65
NUP88-204ENST00000572290 RABL6Q3YEC7 729 aaPredicted RBP25.34■■□□□ 1.65
NUP88-204ENST00000572290 ARHGAP45Q92619 1136 aa25.34■■□□□ 1.65
NUP88-204ENST00000572290 ZBED9Q6R2W3 1325 aa25.34■■□□□ 1.65
NUP88-204ENST00000572290 H7C1D1 291 aa25.33■■□□□ 1.65
NUP88-204ENST00000572290 ITGBL1O95965 494 aaPredicted RBP25.33■■□□□ 1.65
NUP88-204ENST00000572290 VIL1P09327 827 aaKnown RBP25.33■■□□□ 1.65
NUP88-204ENST00000572290 MICALL2Q8IY33 904 aa25.33■■□□□ 1.65
NUP88-204ENST00000572290 CNTROBQ8N137 903 aa25.33■■□□□ 1.65
NUP88-204ENST00000572290 CNNM1Q9NRU3 951 aa25.33■■□□□ 1.65
NUP88-204ENST00000572290 DNAJC5GQ8N7S2 189 aa25.32■■□□□ 1.64
NUP88-204ENST00000572290 ANKRD44Q8N8A2 993 aa25.32■■□□□ 1.64
NUP88-204ENST00000572290 HELBQ8NG08 1087 aaPredicted RBP25.32■■□□□ 1.64
NUP88-204ENST00000572290 PASKQ96RG2 1323 aa25.32■■□□□ 1.64
NUP88-204ENST00000572290 TAF5LO75529 589 aa25.31■■□□□ 1.64
NUP88-204ENST00000572290 TXNRD3Q86VQ6 643 aa25.31■■□□□ 1.64
NUP88-204ENST00000572290 COA1Q9GZY4 146 aa25.31■■□□□ 1.64
NUP88-204ENST00000572290 ADAMTSL1Q8N6G6 1762 aa25.31■■□□□ 1.64
NUP88-204ENST00000572290 SHTN1A0MZ66 631 aa25.3■■□□□ 1.64
NUP88-204ENST00000572290 IPO8O15397 1037 aaKnown RBP25.3■■□□□ 1.64
NUP88-204ENST00000572290 BCAR3O75815 825 aa25.3■■□□□ 1.64
NUP88-204ENST00000572290 USP17L3A6NCW0 530 aa25.29■■□□□ 1.64
NUP88-204ENST00000572290 USP17L4A6NCW7 530 aa25.29■■□□□ 1.64
NUP88-204ENST00000572290 KLRK1P26718 216 aa25.29■■□□□ 1.64
NUP88-204ENST00000572290 RSBN1LQ6PCB5 846 aaPredicted RBP25.29■■□□□ 1.64
NUP88-204ENST00000572290 USP17L1Q7RTZ2 530 aa25.29■■□□□ 1.64
NUP88-204ENST00000572290 TRPM4Q8TD43 1214 aa25.29■■□□□ 1.64
NUP88-204ENST00000572290 SNAP23O00161 211 aa25.28■■□□□ 1.64
NUP88-204ENST00000572290 PLIN1O60240 522 aa25.28■■□□□ 1.64
NUP88-204ENST00000572290 UBTFL1P0CB47 393 aaPredicted RBP25.28■■□□□ 1.64
NUP88-204ENST00000572290 FRAT1Q92837 279 aaPredicted RBP25.28■■□□□ 1.64
NUP88-204ENST00000572290 CEP350Q5VT06 3117 aa25.27■■□□□ 1.64
NUP88-204ENST00000572290 HIRAP54198 1017 aaPredicted RBP25.27■■□□□ 1.64
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms