RNA–Protein interactions for RNA: ENST00000570484.1

CTDNEP1-204, Transcript of CTD nuclear envelope phosphatase 1, humanhuman

TSL 2

Gene CTDNEP1, Length 393 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTDNEP1-204ENST00000570484 MMP10P09238 476 aa8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 POLD1P28340 1107 aa8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 SUSD4Q5VX71 490 aa8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 FAM89AQ96GI7 184 aa8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 SUCLG2Q96I99 432 aa8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 MYH14Q7Z406 1995 aaKnown RBP8.2□□□□□ -1.1
CTDNEP1-204ENST00000570484 AFDNP55196 1824 aaKnown RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 TUBGCP6Q96RT7 1819 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 PSDA5PKW4 1024 aaPredicted RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 H7C1W4 665 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 SERPINB2P05120 415 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 CTSWP56202 376 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 TAF7LQ5H9L4 462 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 C3orf67Q6ZVT6 689 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 NUTM1Q86Y26 1132 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 RPAP2Q8IXW5 612 aaPredicted RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 PLPP6Q8IY26 295 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 JARID2Q92833 1246 aaPredicted RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 OTUD5Q96G74 571 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 RWDD1Q9H446 243 aaPredicted RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 BICC1Q9H694 974 aaKnown RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 ABCC12Q96J65 1359 aa8.19□□□□□ -1.1
CTDNEP1-204ENST00000570484 POLRMTO00411 1230 aaKnown RBP8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 SRGAP3O43295 1099 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 PDE8AO60658 829 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 ZBTB7AO95365 584 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 DDR1Q08345 913 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 OS9Q13438 667 aaPredicted RBP8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 ERFEQ4G0M1 354 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 CCDC152Q4G0S7 254 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 CEP85Q6P2H3 762 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 ANKRD44Q8N8A2 993 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 MTFR1LQ9H019 292 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 EMILIN3Q9NT22 766 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 RIC1Q4ADV7 1423 aa8.18□□□□□ -1.1
CTDNEP1-204ENST00000570484 SLC34A2O95436 690 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 HCLS1P14317 486 aaPredicted RBP8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 CASP7P55210 303 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 CCDC57Q2TAC2 916 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 FAM161AQ3B820 660 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 B4GALNT3Q6L9W6 998 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 PRR5LQ6MZQ0 368 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 LMBR1LQ6UX01 489 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 RPGRQ92834 1020 aaKnown RBP8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 NLRP3Q96P20 1036 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 PLA2G12BQ9BX93 195 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 LAMB2P55268 1798 aa8.17□□□□□ -1.1
CTDNEP1-204ENST00000570484 ANKRD18BA2A2Z9 1011 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 TM4SF1P30408 202 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 IFIT5Q13325 482 aaKnown RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 MTX1Q13505 466 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 HDAC1Q13547 482 aaPredicted RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 RABL6Q3YEC7 729 aaPredicted RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 HSP90AB4PQ58FF6 505 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 CENPQQ7L2Z9 268 aaPredicted RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 CASZ1Q86V15 1759 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 CCDC85AQ96PX6 553 aaPredicted RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 CDC5LQ99459 802 aaKnown RBP8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 PCDHB15Q9Y5E8 787 aa8.16□□□□□ -1.1
CTDNEP1-204ENST00000570484 NUP98P52948 1817 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 C10orf71Q711Q0 1435 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 PNMA6EA0A0J9YXQ4 647 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 ITGA6P23229 1130 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 PDE6BP35913 854 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 IGHMBP2P38935 993 aaKnown RBP8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 FOXO4P98177 505 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 ATP8B2P98198 1209 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 DDX46Q7L014 1031 aaKnown RBP8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 ERC1Q8IUD2 1116 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 SYNE4Q8N205 404 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 CCDC24Q8N4L8 307 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 GCC1Q96CN9 775 aa8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 PDGFDQ9GZP0 370 aaPredicted RBP8.15□□□□□ -1.1
CTDNEP1-204ENST00000570484 RTL9Q8NET4 1388 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 APBB1O00213 710 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SOCS7O14512 581 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SURF6O75683 361 aaKnown RBP8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 G3BP1Q13283 466 aaKnown RBP eCLIP8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 EPHA10Q5JZY3 1008 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 TTLL11Q8NHH1 800 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 OXER1Q8TDS5 423 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SSH3Q8TE77 659 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 RBM17Q96I25 401 aaKnown RBP8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 KAZALD1Q96I82 304 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 MPHOSPH8Q99549 860 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 BRIP1Q9BX63 1249 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SIL1Q9H173 461 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 GREM2Q9H772 168 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SPON1Q9HCB6 807 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 PPP1R1BQ9UD71 204 aaPredicted RBP8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 PDZRN3Q9UPQ7 1066 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 TNRC6CQ9HCJ0 1690 aaKnown RBP8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 LRP5O75197 1615 aa8.14□□□□□ -1.11
CTDNEP1-204ENST00000570484 SF3B3Q15393 1217 aaKnown RBP8.13□□□□□ -1.11
CTDNEP1-204ENST00000570484 SLC10A5Q5PT55 438 aa8.13□□□□□ -1.11
CTDNEP1-204ENST00000570484 ANKRD18AQ8IVF6 992 aa8.13□□□□□ -1.11
CTDNEP1-204ENST00000570484 PTCD2Q8WV60 388 aaKnown RBP8.13□□□□□ -1.11
CTDNEP1-204ENST00000570484 BCL11AQ9H165 835 aa8.13□□□□□ -1.11
CTDNEP1-204ENST00000570484 TMX4Q9H1E5 349 aaPredicted RBP8.13□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms