RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 SLC4A9Q96Q91 983 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 GPR108Q9NPR9 543 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 ZBTB1Q9Y2K1 713 aa9.76□□□□□ -0.85
VPS39-213ENST00000570062 ZNF330Q9Y3S2 320 aaPredicted RBP9.76□□□□□ -0.85
VPS39-213ENST00000570062 RPS6KA4O75676 772 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 GLRX3O76003 335 aaKnown RBP9.75□□□□□ -0.85
VPS39-213ENST00000570062 CIAO1O76071 339 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 IL15P40933 162 aaPredicted RBP9.75□□□□□ -0.85
VPS39-213ENST00000570062 CCDC57Q2TAC2 916 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 KRT27Q7Z3Y8 459 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 KAZALD1Q96I82 304 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 CRISPLD2Q9H0B8 497 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 DAXXQ9UER7 740 aaPredicted RBP9.75□□□□□ -0.85
VPS39-213ENST00000570062 USP42Q9H9J4 1324 aaKnown RBP9.75□□□□□ -0.85
VPS39-213ENST00000570062 GLI3P10071 1580 aa9.75□□□□□ -0.85
VPS39-213ENST00000570062 C5P01031 1676 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 ZNF831Q5JPB2 1677 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 TOGARAM1Q9Y4F4 1720 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 HIP1O00291 1037 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 KCNQ2O43526 872 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 REC8O95072 547 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 CSF1RP07333 972 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 YY1P25490 414 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 PIP4K2AP48426 406 aaPredicted RBP9.74□□□□□ -0.85
VPS39-213ENST00000570062 PPP1R15BQ5SWA1 713 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 LMBR1LQ6UX01 489 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 NLRP10Q86W26 655 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 ZNF34Q8IZ26 560 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 KCTD12Q96CX2 325 aaKnown RBP9.74□□□□□ -0.85
VPS39-213ENST00000570062 IPO9Q96P70 1041 aaKnown RBP9.74□□□□□ -0.85
VPS39-213ENST00000570062 CCNL1Q9UK58 526 aaPredicted RBP9.74□□□□□ -0.85
VPS39-213ENST00000570062 CICQ96RK0 1608 aaPredicted RBP9.74□□□□□ -0.85
VPS39-213ENST00000570062 THSD7AQ9UPZ6 1657 aa9.74□□□□□ -0.85
VPS39-213ENST00000570062 APBB1O00213 710 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 PDE8AO60658 829 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 FOXO4P98177 505 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 IFIT5Q13325 482 aaKnown RBP9.73□□□□□ -0.85
VPS39-213ENST00000570062 BECN1Q14457 450 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 SKAP1Q86WV1 359 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 CNTROBQ8N137 903 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 ZNF454Q8N9F8 522 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 UTP14AQ9BVJ6 771 aaKnown RBP9.73□□□□□ -0.85
VPS39-213ENST00000570062 NYXQ9GZU5 481 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 ECHDC1Q9NTX5 307 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 TRMT112Q9UI30 125 aaKnown RBP9.73□□□□□ -0.85
VPS39-213ENST00000570062 AKAP2Q9Y2D5 859 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 RTCBQ9Y3I0 505 aaKnown RBP9.73□□□□□ -0.85
VPS39-213ENST00000570062 SH3TC1Q8TE82 1336 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 SALL3Q9BXA9 1300 aa9.73□□□□□ -0.85
VPS39-213ENST00000570062 SMARCA5O60264 1052 aaPredicted RBP9.72□□□□□ -0.85
VPS39-213ENST00000570062 ZPR1O75312 459 aa9.72□□□□□ -0.85
VPS39-213ENST00000570062 PTPN12Q05209 780 aaKnown RBP9.72□□□□□ -0.85
VPS39-213ENST00000570062 ITPK1Q13572 414 aa9.72□□□□□ -0.85
VPS39-213ENST00000570062 TAF7LQ5H9L4 462 aa9.72□□□□□ -0.85
VPS39-213ENST00000570062 C16orf71Q8IYS4 520 aaPredicted RBP9.72□□□□□ -0.85
VPS39-213ENST00000570062 RUFY2Q8WXA3 655 aa9.72□□□□□ -0.85
VPS39-213ENST00000570062 NARFQ9UHQ1 456 aa9.72□□□□□ -0.85
VPS39-213ENST00000570062 ITGB4P16144 1822 aa9.71□□□□□ -0.85
VPS39-213ENST00000570062 ANKRD18BA2A2Z9 1011 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 EYA2O00167 538 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 IRS4O14654 1257 aaPredicted RBP9.71□□□□□ -0.86
VPS39-213ENST00000570062 CAMTA2O94983 1202 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 SDSP20132 328 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 RFX5P48382 616 aaPredicted RBP9.71□□□□□ -0.86
VPS39-213ENST00000570062 LRRFIP1Q32MZ4 808 aaKnown RBP9.71□□□□□ -0.86
VPS39-213ENST00000570062 TRAPPC3LQ5T215 181 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 TBC1D2BQ9UPU7 963 aa9.71□□□□□ -0.86
VPS39-213ENST00000570062 DOT1LQ8TEK3 1739 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 PLSCR1O15162 318 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 RBM25P49756 843 aaKnown RBP9.7□□□□□ -0.86
VPS39-213ENST00000570062 HLFQ16534 295 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 CCDC152Q4G0S7 254 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 AACSQ86V21 672 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 EVI5LQ96CN4 794 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 TBC1D32Q96NH3 1257 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 C22orf23Q9BZE7 217 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 IL1RAPL2Q9NP60 686 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 CEP126Q9P2H0 1117 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 NIP7Q9Y221 180 aaKnown RBP eCLIP9.7□□□□□ -0.86
VPS39-213ENST00000570062 VPS9D1Q9Y2B5 631 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 CHMP3Q9Y3E7 222 aa9.7□□□□□ -0.86
VPS39-213ENST00000570062 TRIM6-TRIM34B2RNG4 842 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 SASH1O94885 1247 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 GSPT1P15170 499 aaKnown RBP9.69□□□□□ -0.86
VPS39-213ENST00000570062 MCCP23508 829 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 RFC4P35249 363 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 CTSWP56202 376 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 EPHA10Q5JZY3 1008 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 SLC10A5Q5PT55 438 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 TPTE2Q6XPS3 522 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 TBC1D9Q6ZT07 1266 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 LINC00116Q8NCU8 138 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 RTL9Q8NET4 1388 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 FLAD1Q8NFF5 587 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 FAM89AQ96GI7 184 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 SETDB2Q96T68 719 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 BCL2L12Q9HB09 334 aa9.69□□□□□ -0.86
VPS39-213ENST00000570062 MROH5Q6ZUA9 1318 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 ATP5JP18859 108 aa9.68□□□□□ -0.86
VPS39-213ENST00000570062 GPTP24298 496 aa9.68□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms