RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 FOXO4P98177 505 aa19.07■□□□□ 0.64
VPS39-210ENST00000568357 HNRNPUQ00839 825 aaKnown RBP eCLIP19.07■□□□□ 0.64
VPS39-210ENST00000568357 SRCIN1Q9C0H9 1055 aa19.07■□□□□ 0.64
VPS39-210ENST00000568357 PTPRCP08575 1304 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 C6orf229H3BNL8 230 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 GRM8O00222 908 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 GPC2Q8N158 579 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 TBC1D16Q8TBP0 767 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 CDC5LQ99459 802 aaKnown RBP19.06■□□□□ 0.64
VPS39-210ENST00000568357 SMC4Q9NTJ3 1288 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 PODXL2Q9NZ53 605 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 ZNRF3Q9ULT6 936 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 GJA3Q9Y6H8 435 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 RTL9Q8NET4 1388 aa19.06■□□□□ 0.64
VPS39-210ENST00000568357 THSD7BQ9C0I4 1608 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 RIMBP2O15034 1052 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 CXCL9Q07325 125 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 WASHC4Q2M389 1173 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 EPHA10Q5JZY3 1008 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 GPR101Q96P66 508 aaPredicted RBP19.05■□□□□ 0.64
VPS39-210ENST00000568357 ANKIB1Q9P2G1 1089 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 DUOX1Q9NRD9 1551 aa19.05■□□□□ 0.64
VPS39-210ENST00000568357 WTIPA6NIX2 430 aaPredicted RBP19.04■□□□□ 0.64
VPS39-210ENST00000568357 TMEM88BA6NKF7 163 aa19.04■□□□□ 0.64
VPS39-210ENST00000568357 ITGA6P23229 1130 aa19.04■□□□□ 0.64
VPS39-210ENST00000568357 LDHDQ86WU2 507 aa19.04■□□□□ 0.64
VPS39-210ENST00000568357 TAF1DQ9H5J8 278 aaPredicted RBP19.04■□□□□ 0.64
VPS39-210ENST00000568357 BSDC1Q9NW68 430 aaPredicted RBP19.04■□□□□ 0.64
VPS39-210ENST00000568357 C9orf78Q9NZ63 289 aaPredicted RBP19.04■□□□□ 0.64
VPS39-210ENST00000568357 IQCA1LA6NCM1 817 aa19.03■□□□□ 0.64
VPS39-210ENST00000568357 YDJCA8MPS7 323 aa19.03■□□□□ 0.64
VPS39-210ENST00000568357 NBPF7P0C2Y1 421 aaPredicted RBP19.03■□□□□ 0.64
VPS39-210ENST00000568357 RARSP54136 660 aaKnown RBP19.03■□□□□ 0.64
VPS39-210ENST00000568357 MLLT1Q03111 559 aaPredicted RBP19.03■□□□□ 0.64
VPS39-210ENST00000568357 NOB1Q9ULX3 412 aaKnown RBP19.03■□□□□ 0.64
VPS39-210ENST00000568357 MINPP1Q9UNW1 487 aa19.03■□□□□ 0.64
VPS39-210ENST00000568357 LRRC37AA6NMS7 1700 aa19.03■□□□□ 0.64
VPS39-210ENST00000568357 ITGBL1O95965 494 aaPredicted RBP19.02■□□□□ 0.64
VPS39-210ENST00000568357 KAZALD1Q96I82 304 aa19.02■□□□□ 0.64
VPS39-210ENST00000568357 HACL1Q9UJ83 578 aa19.02■□□□□ 0.64
VPS39-210ENST00000568357 GGA1Q9UJY5 639 aa19.02■□□□□ 0.64
VPS39-210ENST00000568357 RAD17O75943 681 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 UFL1O94874 794 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 SCNN1DP51172 638 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 BRPF1P55201 1214 aaPredicted RBP19.01■□□□□ 0.63
VPS39-210ENST00000568357 DOK7Q18PE1 504 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 LMBR1LQ6UX01 489 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 EYA3Q99504 573 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 DBNDD1Q9H9R9 158 aa19.01■□□□□ 0.63
VPS39-210ENST00000568357 UTYO14607 1347 aa19■□□□□ 0.63
VPS39-210ENST00000568357 CCDC85CA6NKD9 419 aa19■□□□□ 0.63
VPS39-210ENST00000568357 EPHX2P34913 555 aa19■□□□□ 0.63
VPS39-210ENST00000568357 IGHMBP2P38935 993 aaKnown RBP19■□□□□ 0.63
VPS39-210ENST00000568357 SUCLG2Q96I99 432 aa19■□□□□ 0.63
VPS39-210ENST00000568357 ZC3H12CQ9C0D7 883 aaKnown RBP19■□□□□ 0.63
VPS39-210ENST00000568357 KCNQ5Q9NR82 932 aa19■□□□□ 0.63
VPS39-210ENST00000568357 XDHP47989 1333 aa19■□□□□ 0.63
VPS39-210ENST00000568357 ANKRD18BA2A2Z9 1011 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 RASSF10A6NK89 507 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 EPS15P42566 896 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 IFIT5Q13325 482 aaKnown RBP18.99■□□□□ 0.63
VPS39-210ENST00000568357 CIAPIN1Q6FI81 312 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 USP44Q9H0E7 712 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 CHMP3Q9Y3E7 222 aa18.99■□□□□ 0.63
VPS39-210ENST00000568357 ATP2B4P23634 1241 aa18.98■□□□□ 0.63
VPS39-210ENST00000568357 RGS19P49795 217 aa18.98■□□□□ 0.63
VPS39-210ENST00000568357 EAPPQ56P03 285 aaPredicted RBP18.98■□□□□ 0.63
VPS39-210ENST00000568357 MPHOSPH8Q99549 860 aa18.98■□□□□ 0.63
VPS39-210ENST00000568357 LTBP1Q14766 1721 aa18.97■□□□□ 0.63
VPS39-210ENST00000568357 ECE2O60344 883 aa18.97■□□□□ 0.63
VPS39-210ENST00000568357 GMPSP49915 693 aaPredicted RBP18.97■□□□□ 0.63
VPS39-210ENST00000568357 TNIP1Q15025 636 aa18.97■□□□□ 0.63
VPS39-210ENST00000568357 ZNF594Q96JF6 807 aaPredicted RBP18.97■□□□□ 0.63
VPS39-210ENST00000568357 WDR33Q9C0J8 1336 aaKnown RBP18.97■□□□□ 0.63
VPS39-210ENST00000568357 LMOD1P29536 600 aaPredicted RBP18.96■□□□□ 0.63
VPS39-210ENST00000568357 CCT4P50991 539 aaKnown RBP18.96■□□□□ 0.63
VPS39-210ENST00000568357 DEFB115Q30KQ5 88 aa18.96■□□□□ 0.63
VPS39-210ENST00000568357 PNMA8AQ86V59 439 aaPredicted RBP18.96■□□□□ 0.63
VPS39-210ENST00000568357 GPRC5DQ9NZD1 345 aa18.96■□□□□ 0.63
VPS39-210ENST00000568357 PSMD14O00487 310 aa18.95■□□□□ 0.62
VPS39-210ENST00000568357 BCAR3O75815 825 aa18.95■□□□□ 0.62
VPS39-210ENST00000568357 CHRNDQ07001 517 aa18.95■□□□□ 0.62
VPS39-210ENST00000568357 CCDC57Q2TAC2 916 aa18.95■□□□□ 0.62
VPS39-210ENST00000568357 API5Q9BZZ5 524 aaKnown RBP18.95■□□□□ 0.62
VPS39-210ENST00000568357 BICC1Q9H694 974 aaKnown RBP18.95■□□□□ 0.62
VPS39-210ENST00000568357 MAP2K1Q02750 393 aaPredicted RBP18.94■□□□□ 0.62
VPS39-210ENST00000568357 RABL6Q3YEC7 729 aaPredicted RBP18.94■□□□□ 0.62
VPS39-210ENST00000568357 MAP1SQ66K74 1059 aaPredicted RBP18.94■□□□□ 0.62
VPS39-210ENST00000568357 ANKRD44Q8N8A2 993 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 ARHGAP45Q92619 1136 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 ANKRD2Q9GZV1 360 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 CLEC11AQ9Y240 323 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 LEMD3Q9Y2U8 911 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 ZBTB12Q9Y330 459 aaPredicted RBP18.94■□□□□ 0.62
VPS39-210ENST00000568357 ZBED9Q6R2W3 1325 aa18.94■□□□□ 0.62
VPS39-210ENST00000568357 SHTN1A0MZ66 631 aa18.93■□□□□ 0.62
VPS39-210ENST00000568357 G3V3G9 751 aa18.93■□□□□ 0.62
VPS39-210ENST00000568357 TAF5LO75529 589 aa18.93■□□□□ 0.62
VPS39-210ENST00000568357 DCAF8Q5TAQ9 597 aa18.93■□□□□ 0.62
VPS39-210ENST00000568357 TXNRD3Q86VQ6 643 aa18.93■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms