RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 ANKRD18BA2A2Z9 1011 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 WTIPA6NIX2 430 aaPredicted RBP12.34□□□□□ -0.43
CLK3-220ENST00000567992 KIF3CO14782 793 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 RLBP1P12271 317 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 IGHMBP2P38935 993 aaKnown RBP12.34□□□□□ -0.43
CLK3-220ENST00000567992 IFIT5Q13325 482 aaKnown RBP12.34□□□□□ -0.43
CLK3-220ENST00000567992 LARGE2Q8N3Y3 721 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 TMEM57Q8N5G2 664 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 CLUAP1Q96AJ1 413 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 ZNF594Q96JF6 807 aaPredicted RBP12.34□□□□□ -0.43
CLK3-220ENST00000567992 VPS33BQ9H267 617 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 CHMP3Q9Y3E7 222 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 SCN4AP35499 1836 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 XDHP47989 1333 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 KDM2BQ8NHM5 1336 aa12.34□□□□□ -0.43
CLK3-220ENST00000567992 POTECB2RU33 542 aa12.33□□□□□ -0.44
CLK3-220ENST00000567992 UFL1O94874 794 aa12.33□□□□□ -0.44
CLK3-220ENST00000567992 YTHDC1Q96MU7 727 aaKnown RBP12.33□□□□□ -0.44
CLK3-220ENST00000567992 YDJCA8MPS7 323 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 DDNO94850 711 aaPredicted RBP12.32□□□□□ -0.44
CLK3-220ENST00000567992 UBTFL1P0CB47 393 aaPredicted RBP12.32□□□□□ -0.44
CLK3-220ENST00000567992 RFX5P48382 616 aaPredicted RBP12.32□□□□□ -0.44
CLK3-220ENST00000567992 NIM1KQ8IY84 436 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 JDP2Q8WYK2 163 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 ANKIB1Q9P2G1 1089 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 GGA1Q9UJY5 639 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 RCAN3Q9UKA8 241 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 LRRFIP2Q9Y608 721 aaKnown RBP12.32□□□□□ -0.44
CLK3-220ENST00000567992 ADAMTSL1Q8N6G6 1762 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 IRS2Q9Y4H2 1338 aa12.32□□□□□ -0.44
CLK3-220ENST00000567992 MED23Q9ULK4 1368 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 C6orf229H3BNL8 230 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 CHRNDQ07001 517 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 WASHC4Q2M389 1173 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 CCDC57Q2TAC2 916 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 L3MBTL3Q96JM7 780 aaPredicted RBP12.31□□□□□ -0.44
CLK3-220ENST00000567992 MPHOSPH8Q99549 860 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 ZNRF3Q9ULT6 936 aa12.31□□□□□ -0.44
CLK3-220ENST00000567992 RIMBP2O15034 1052 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 ATP2B4P23634 1241 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 KLRK1P26718 216 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 CXCL9Q07325 125 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 DZIP1LQ8IYY4 767 aaKnown RBP12.3□□□□□ -0.44
CLK3-220ENST00000567992 GPC2Q8N158 579 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 KLHDC4Q8TBB5 520 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 PANK1Q8TE04 598 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 EYA3Q99504 573 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 PUS3Q9BZE2 481 aaKnown RBP12.3□□□□□ -0.44
CLK3-220ENST00000567992 DBNDD1Q9H9R9 158 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 RRAGCQ9HB90 399 aa12.3□□□□□ -0.44
CLK3-220ENST00000567992 SNAP23O00161 211 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 TAF5LO75529 589 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 GNAI3P08754 354 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 DPY19L2Q6NUT2 758 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 LDHAL6AQ6ZMR3 332 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 TXNRD3Q86VQ6 643 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 ANKRD2Q9GZV1 360 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 LEMD3Q9Y2U8 911 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 RIPOR2Q9Y4F9 1068 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 ZNF804BA4D1E1 1349 aa12.29□□□□□ -0.44
CLK3-220ENST00000567992 PLIN1O60240 522 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 ECE2O60344 883 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 SCNN1DP51172 638 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 EIF6P56537 245 aaKnown RBP12.28□□□□□ -0.44
CLK3-220ENST00000567992 PTPN12Q05209 780 aaKnown RBP12.28□□□□□ -0.44
CLK3-220ENST00000567992 MTX1Q13505 466 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 DOK7Q18PE1 504 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 LRRC24Q50LG9 513 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 TAF7LQ5H9L4 462 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 FTSJ3Q8IY81 847 aaKnown RBP12.28□□□□□ -0.44
CLK3-220ENST00000567992 VGLL2Q8N8G2 317 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 HELBQ8NG08 1087 aaPredicted RBP12.28□□□□□ -0.44
CLK3-220ENST00000567992 KCNQ5Q9NR82 932 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 ARAP2Q8WZ64 1704 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 ZNF609O15014 1411 aa12.28□□□□□ -0.44
CLK3-220ENST00000567992 RAD17O75943 681 aa12.27□□□□□ -0.45
CLK3-220ENST00000567992 VEGFAP15692 232 aaPredicted RBP12.27□□□□□ -0.45
CLK3-220ENST00000567992 ZC3H12CQ9C0D7 883 aaKnown RBP12.27□□□□□ -0.45
CLK3-220ENST00000567992 CNNM1Q9NRU3 951 aa12.27□□□□□ -0.45
CLK3-220ENST00000567992 ZBTB7BO15156 539 aaPredicted RBP12.26□□□□□ -0.45
CLK3-220ENST00000567992 GNAI2P04899 355 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 CIAPIN1Q6FI81 312 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 C15orf52Q6ZUT6 534 aaKnown RBP12.26□□□□□ -0.45
CLK3-220ENST00000567992 ATG9AQ7Z3C6 839 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 ITPRIPQ8IWB1 547 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 GJA3Q9Y6H8 435 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 MROH5Q6ZUA9 1318 aa12.26□□□□□ -0.45
CLK3-220ENST00000567992 EYA2O00167 538 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 PSMD14O00487 310 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 TOMM70O94826 608 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 C1QTNF8P60827 252 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 C20orf194Q5TEA3 1177 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 TAF1DQ9H5J8 278 aaPredicted RBP12.25□□□□□ -0.45
CLK3-220ENST00000567992 C1orf115Q9H7X2 142 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 COPRSQ9NQ92 184 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 HDAC5Q9UQL6 1122 aa12.25□□□□□ -0.45
CLK3-220ENST00000567992 PNMA6EA0A0J9YXQ4 647 aa12.24□□□□□ -0.45
CLK3-220ENST00000567992 IQCA1LA6NCM1 817 aa12.24□□□□□ -0.45
CLK3-220ENST00000567992 SRGAP3O43295 1099 aa12.24□□□□□ -0.45
CLK3-220ENST00000567992 POTEIP0CG38 1075 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms