RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 PITPNM2Q9BZ72 1349 aa22.14■■□□□ 1.14
CDH3-205ENST00000566808 VIL1P09327 827 aaKnown RBP22.14■■□□□ 1.13
CDH3-205ENST00000566808 NFE2L2Q16236 605 aa22.14■■□□□ 1.13
CDH3-205ENST00000566808 KCNQ5Q9NR82 932 aa22.14■■□□□ 1.13
CDH3-205ENST00000566808 TSPYL4Q9UJ04 414 aa22.14■■□□□ 1.13
CDH3-205ENST00000566808 CENPFP49454 3210 aa22.14■■□□□ 1.13
CDH3-205ENST00000566808 TBC1D8O95759 1140 aa22.13■■□□□ 1.13
CDH3-205ENST00000566808 ANXA1P04083 346 aa22.13■■□□□ 1.13
CDH3-205ENST00000566808 EIF2S2P20042 333 aaKnown RBP22.13■■□□□ 1.13
CDH3-205ENST00000566808 ZNF280AP59817 542 aaPredicted RBP22.13■■□□□ 1.13
CDH3-205ENST00000566808 GPSM2P81274 684 aa22.13■■□□□ 1.13
CDH3-205ENST00000566808 TCIRG1Q13488 830 aa22.13■■□□□ 1.13
CDH3-205ENST00000566808 DOK7Q18PE1 504 aa22.13■■□□□ 1.13
CDH3-205ENST00000566808 HABP4Q5JVS0 413 aaKnown RBP22.13■■□□□ 1.13
CDH3-205ENST00000566808 ANGEL2Q5VTE6 544 aaKnown RBP22.13■■□□□ 1.13
CDH3-205ENST00000566808 CELF1Q92879 486 aaKnown RBP22.13■■□□□ 1.13
CDH3-205ENST00000566808 KIAA0100Q14667 2235 aaKnown RBP22.11■■□□□ 1.13
CDH3-205ENST00000566808 GPR25O00155 361 aa22.11■■□□□ 1.13
CDH3-205ENST00000566808 COPS6Q7L5N1 327 aa22.11■■□□□ 1.13
CDH3-205ENST00000566808 XAGE3Q8WTP9 111 aa22.11■■□□□ 1.13
CDH3-205ENST00000566808 SCARF1Q14162 830 aa22.1■■□□□ 1.13
CDH3-205ENST00000566808 SF3B3Q15393 1217 aaKnown RBP22.1■■□□□ 1.13
CDH3-205ENST00000566808 AGBL3Q8NEM8 1001 aa22.1■■□□□ 1.13
CDH3-205ENST00000566808 TBC1D16Q8TBP0 767 aa22.1■■□□□ 1.13
CDH3-205ENST00000566808 AIMP1Q12904 312 aaKnown RBP22.09■■□□□ 1.13
CDH3-205ENST00000566808 NECTIN2Q92692 538 aa22.09■■□□□ 1.13
CDH3-205ENST00000566808 PLEKHF1Q96S99 279 aa22.09■■□□□ 1.13
CDH3-205ENST00000566808 CFHR5Q9BXR6 569 aa22.09■■□□□ 1.13
CDH3-205ENST00000566808 CEP290O15078 2479 aa22.09■■□□□ 1.13
CDH3-205ENST00000566808 TM4SF4P48230 202 aa22.08■■□□□ 1.13
CDH3-205ENST00000566808 RSBN1LQ6PCB5 846 aaPredicted RBP22.08■■□□□ 1.13
CDH3-205ENST00000566808 ZC3H12CQ9C0D7 883 aaKnown RBP22.08■■□□□ 1.13
CDH3-205ENST00000566808 LAMB1P07942 1786 aa22.07■■□□□ 1.12
CDH3-205ENST00000566808 BRCA2P51587 3418 aa22.07■■□□□ 1.12
CDH3-205ENST00000566808 FKTNO75072 461 aa22.07■■□□□ 1.12
CDH3-205ENST00000566808 SREBF2Q12772 1141 aa22.07■■□□□ 1.12
CDH3-205ENST00000566808 PODXL2Q9NZ53 605 aa22.07■■□□□ 1.12
CDH3-205ENST00000566808 MAPK8IP3Q9UPT6 1336 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 G3V3G9 751 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 DCAF8Q5TAQ9 597 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 MOB2Q70IA6 237 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 MYOZ2Q9NPC6 264 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 BABAM1Q9NWV8 329 aa22.06■■□□□ 1.12
CDH3-205ENST00000566808 UBE2Q2LH0YL09 131 aa22.05■■□□□ 1.12
CDH3-205ENST00000566808 UFL1O94874 794 aa22.05■■□□□ 1.12
CDH3-205ENST00000566808 ZNF646O15015 1829 aaPredicted RBP22.05■■□□□ 1.12
CDH3-205ENST00000566808 USP17L8P0C7I0 530 aa22.04■■□□□ 1.12
CDH3-205ENST00000566808 FAM89AQ96GI7 184 aa22.04■■□□□ 1.12
CDH3-205ENST00000566808 GMLQ99445 158 aa22.04■■□□□ 1.12
CDH3-205ENST00000566808 RPS8P62241 208 aaKnown RBP22.03■■□□□ 1.12
CDH3-205ENST00000566808 TRIOBPQ9H2D6 2365 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 NF2P35240 595 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 TTLL12Q14166 644 aaPredicted RBP22.02■■□□□ 1.12
CDH3-205ENST00000566808 INTS3Q68E01 1043 aaKnown RBP22.02■■□□□ 1.12
CDH3-205ENST00000566808 PLBD2Q8NHP8 589 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 CCER1Q8TC90 406 aaPredicted RBP22.02■■□□□ 1.12
CDH3-205ENST00000566808 ZNF428Q96B54 188 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 ISCA1Q9BUE6 129 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 PNNQ9H307 717 aaKnown RBP22.02■■□□□ 1.12
CDH3-205ENST00000566808 GGA1Q9UJY5 639 aa22.02■■□□□ 1.12
CDH3-205ENST00000566808 ANKIB1Q9P2G1 1089 aa22.01■■□□□ 1.11
CDH3-205ENST00000566808 FXR1P51114 621 aaKnown RBP eCLIP22■■□□□ 1.11
CDH3-205ENST00000566808 IRS4O14654 1257 aaPredicted RBP21.99■■□□□ 1.11
CDH3-205ENST00000566808 ALDH1A1P00352 501 aa21.99■■□□□ 1.11
CDH3-205ENST00000566808 MKRN3Q13064 507 aaKnown RBP21.99■■□□□ 1.11
CDH3-205ENST00000566808 CHPF2Q9P2E5 772 aa21.99■■□□□ 1.11
CDH3-205ENST00000566808 SCAF8Q9UPN6 1271 aaKnown RBP21.99■■□□□ 1.11
CDH3-205ENST00000566808 POTEFA5A3E0 1075 aa21.98■■□□□ 1.11
CDH3-205ENST00000566808 R3HDMLQ9H3Y0 253 aa21.98■■□□□ 1.11
CDH3-205ENST00000566808 USP17L3A6NCW0 530 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 USP17L4A6NCW7 530 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 ATP5J2-PTCD1G3V325 749 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 PRAMEF18Q5VWM3 479 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 ANKRD13DQ6ZTN6 518 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 USP17L1Q7RTZ2 530 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 TRIM17Q9Y577 477 aa21.97■■□□□ 1.11
CDH3-205ENST00000566808 NBPF9Q3BBW0 867 aa21.96■■□□□ 1.11
CDH3-205ENST00000566808 RTL5Q5HYW3 569 aaPredicted RBP21.96■■□□□ 1.11
CDH3-205ENST00000566808 OTOP1Q7RTM1 612 aa21.96■■□□□ 1.11
CDH3-205ENST00000566808 ARMC9Q7Z3E5 817 aa21.96■■□□□ 1.11
CDH3-205ENST00000566808 PODNQ7Z5L7 613 aa21.96■■□□□ 1.11
CDH3-205ENST00000566808 XDHP47989 1333 aa21.96■■□□□ 1.11
CDH3-205ENST00000566808 SPEF2Q9C093 1822 aa21.95■■□□□ 1.1
CDH3-205ENST00000566808 HSP90B1P14625 803 aaKnown RBP21.95■■□□□ 1.1
CDH3-205ENST00000566808 LMOD3Q0VAK6 560 aa21.95■■□□□ 1.1
CDH3-205ENST00000566808 TRIM28Q13263 835 aaKnown RBP21.95■■□□□ 1.1
CDH3-205ENST00000566808 SEC31BQ9NQW1 1179 aa21.95■■□□□ 1.1
CDH3-205ENST00000566808 COL1A1P02452 1464 aaPredicted RBP21.95■■□□□ 1.1
CDH3-205ENST00000566808 PTPN12Q05209 780 aaKnown RBP21.94■■□□□ 1.1
CDH3-205ENST00000566808 SPRYD7Q5W111 196 aa21.94■■□□□ 1.1
CDH3-205ENST00000566808 OGFOD1Q8N543 542 aa21.94■■□□□ 1.1
CDH3-205ENST00000566808 SZT2Q5T011 3432 aa21.94■■□□□ 1.1
CDH3-205ENST00000566808 RIPK4P57078 832 aa21.93■■□□□ 1.1
CDH3-205ENST00000566808 HDGFL1Q5TGJ6 251 aa21.93■■□□□ 1.1
CDH3-205ENST00000566808 MYO3BQ8WXR4 1341 aa21.93■■□□□ 1.1
CDH3-205ENST00000566808 MYH3P11055 1940 aa21.92■■□□□ 1.1
CDH3-205ENST00000566808 ECM29Q5VYK3 1845 aa21.92■■□□□ 1.1
CDH3-205ENST00000566808 MED23Q9ULK4 1368 aa21.92■■□□□ 1.1
CDH3-205ENST00000566808 MANSC4A6NHS7 340 aaPredicted RBP21.92■■□□□ 1.1
CDH3-205ENST00000566808 WNT10BO00744 389 aa21.92■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms