RNA–Protein interactions for RNA: ENST00000565173.1

CAPN3-213, Transcript of calpain 3, humanhuman

TSL 4

Gene CAPN3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CAPN3-213ENST00000565173 SAMD7Q7Z3H4 446 aa11.09□□□□□ -0.63
CAPN3-213ENST00000565173 HHIPL1Q96JK4 782 aa11.09□□□□□ -0.63
CAPN3-213ENST00000565173 CWC25Q9NXE8 425 aaPredicted RBP11.09□□□□□ -0.63
CAPN3-213ENST00000565173 ECE2O60344 883 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 PDE8AO60658 829 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 AOC2O75106 756 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 IGKV5-2P06315 115 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 VIL1P09327 827 aaKnown RBP11.08□□□□□ -0.64
CAPN3-213ENST00000565173 RPS12P25398 132 aaKnown RBP11.08□□□□□ -0.64
CAPN3-213ENST00000565173 CCDC27Q2M243 656 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 CCDC152Q4G0S7 254 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 USP48Q86UV5 1035 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 WWC1Q8IX03 1113 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 TSR2Q969E8 191 aaKnown RBP11.08□□□□□ -0.64
CAPN3-213ENST00000565173 EYA3Q99504 573 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 MAP3K2Q9Y2U5 619 aa11.08□□□□□ -0.64
CAPN3-213ENST00000565173 PI4KAP2A4QPH2 592 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 WTIPA6NIX2 430 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 DDX58O95786 925 aaKnown RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 HSP90B1P14625 803 aaKnown RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 MAP2K2P36507 400 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 GRM1Q13255 1194 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 TBC1D10BQ4KMP7 808 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 KSR2Q6VAB6 950 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 PAXIP1Q6ZW49 1069 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 PI4KAP1Q8N8J0 262 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 CCDC85AQ96PX6 553 aaPredicted RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 CHMP4AQ9BY43 222 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 ZC3H12CQ9C0D7 883 aaKnown RBP11.07□□□□□ -0.64
CAPN3-213ENST00000565173 SCN9AQ15858 1988 aa11.07□□□□□ -0.64
CAPN3-213ENST00000565173 UFL1O94874 794 aa11.06□□□□□ -0.64
CAPN3-213ENST00000565173 G2E3Q7L622 706 aa11.06□□□□□ -0.64
CAPN3-213ENST00000565173 ANKIB1Q9P2G1 1089 aa11.06□□□□□ -0.64
CAPN3-213ENST00000565173 GGA1Q9UJY5 639 aa11.06□□□□□ -0.64
CAPN3-213ENST00000565173 CTSWP56202 376 aa11.05□□□□□ -0.64
CAPN3-213ENST00000565173 ZNF280AP59817 542 aaPredicted RBP11.05□□□□□ -0.64
CAPN3-213ENST00000565173 CWF19L2Q2TBE0 894 aaKnown RBP11.05□□□□□ -0.64
CAPN3-213ENST00000565173 NCBP3Q53F19 620 aaKnown RBP11.05□□□□□ -0.64
CAPN3-213ENST00000565173 RBM26Q5T8P6 1007 aaKnown RBP11.05□□□□□ -0.64
CAPN3-213ENST00000565173 TTLL11Q8NHH1 800 aa11.05□□□□□ -0.64
CAPN3-213ENST00000565173 GMLQ99445 158 aa11.05□□□□□ -0.64
CAPN3-213ENST00000565173 ZNF408Q9H9D4 720 aa11.05□□□□□ -0.64
CAPN3-213ENST00000565173 NEURL1BA8MQ27 555 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 H7C1W4 665 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 TWISTNBQ3B726 338 aaPredicted RBP11.04□□□□□ -0.64
CAPN3-213ENST00000565173 KRT26Q7Z3Y9 468 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 ANKRD18AQ8IVF6 992 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 ZIC5Q96T25 663 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 GREM2Q9H772 168 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 TSKSQ9UJT2 592 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 ASTN2O75129 1339 aaPredicted RBP11.04□□□□□ -0.64
CAPN3-213ENST00000565173 XDHP47989 1333 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 IL16Q14005 1332 aa11.04□□□□□ -0.64
CAPN3-213ENST00000565173 POLR2AP24928 1970 aaKnown RBP11.03□□□□□ -0.64
CAPN3-213ENST00000565173 ZNF609O15014 1411 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 ADM5C9JUS6 153 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 SLC4A2P04920 1241 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 ATP2B4P23634 1241 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 BRPF1P55201 1214 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-213ENST00000565173 HUNKP57058 714 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 KIF4BQ2VIQ3 1234 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 RSBN1LQ6PCB5 846 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-213ENST00000565173 AGBL3Q8NEM8 1001 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 DCPSQ96C86 337 aaKnown RBP11.03□□□□□ -0.64
CAPN3-213ENST00000565173 BEGAINQ9BUH8 593 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 STK31Q9BXU1 1019 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
CAPN3-213ENST00000565173 MINPP1Q9UNW1 487 aa11.03□□□□□ -0.64
CAPN3-213ENST00000565173 FAM155AB1AL88 458 aaPredicted RBP11.02□□□□□ -0.65
CAPN3-213ENST00000565173 G3V3G9 751 aa11.02□□□□□ -0.65
CAPN3-213ENST00000565173 CASP7P55210 303 aa11.02□□□□□ -0.65
CAPN3-213ENST00000565173 DCAF8Q5TAQ9 597 aa11.02□□□□□ -0.65
CAPN3-213ENST00000565173 PODNQ7Z5L7 613 aa11.02□□□□□ -0.65
CAPN3-213ENST00000565173 ABHD8Q96I13 439 aa11.02□□□□□ -0.65
CAPN3-213ENST00000565173 CDC5LQ99459 802 aaKnown RBP11.02□□□□□ -0.65
CAPN3-213ENST00000565173 CA12O43570 354 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 VAMP4O75379 141 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 NEXNQ0ZGT2 675 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 NOGQ13253 232 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 SCARF1Q14162 830 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 GCKRQ14397 625 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 UBE3BQ7Z3V4 1068 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 PLA2G12BQ9BX93 195 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 GBA2Q9HCG7 927 aaPredicted RBP11.01□□□□□ -0.65
CAPN3-213ENST00000565173 GGA3Q9NZ52 723 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 FANCIQ9NVI1 1328 aa11.01□□□□□ -0.65
CAPN3-213ENST00000565173 PSME4Q14997 1843 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 USP17L3A6NCW0 530 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 USP17L4A6NCW7 530 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 CSF1RP07333 972 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 USP17L8P0C7I0 530 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 CCT4P50991 539 aaKnown RBP11□□□□□ -0.65
CAPN3-213ENST00000565173 FLIIQ13045 1269 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 ANGEL2Q5VTE6 544 aaKnown RBP11□□□□□ -0.65
CAPN3-213ENST00000565173 RGMBQ6NW40 437 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 USP17L1Q7RTZ2 530 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 TXNRD3Q86VQ6 643 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 WDR63Q8IWG1 891 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 SULF1Q8IWU6 871 aa11□□□□□ -0.65
CAPN3-213ENST00000565173 C2orf69Q8N8R5 385 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms