RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 DIEXFQ68CQ4 756 aaKnown RBP23.37■■□□□ 1.33
CLN3-214ENST00000565140 CIAPIN1Q6FI81 312 aa23.37■■□□□ 1.33
CLN3-214ENST00000565140 PNMA8AQ86V59 439 aaPredicted RBP23.37■■□□□ 1.33
CLN3-214ENST00000565140 WTIPA6NIX2 430 aaPredicted RBP23.36■■□□□ 1.33
CLN3-214ENST00000565140 UFL1O94874 794 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 DOK7Q18PE1 504 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 SSH1Q8WYL5 1049 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 EYA3Q99504 573 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 KCNQ5Q9NR82 932 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 BSDC1Q9NW68 430 aaPredicted RBP23.36■■□□□ 1.33
CLN3-214ENST00000565140 GGA1Q9UJY5 639 aa23.36■■□□□ 1.33
CLN3-214ENST00000565140 PCNTO95613 3336 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 GMPSP49915 693 aaPredicted RBP23.35■■□□□ 1.33
CLN3-214ENST00000565140 TNIP1Q15025 636 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 FAM161AQ3B820 660 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 SLC4A10Q6U841 1118 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 GPRC5DQ9NZD1 345 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 MINPP1Q9UNW1 487 aa23.35■■□□□ 1.33
CLN3-214ENST00000565140 XDHP47989 1333 aa23.34■■□□□ 1.33
CLN3-214ENST00000565140 ITGBL1O95965 494 aaPredicted RBP23.34■■□□□ 1.33
CLN3-214ENST00000565140 ITGA6P23229 1130 aa23.34■■□□□ 1.33
CLN3-214ENST00000565140 FOXO4P98177 505 aa23.34■■□□□ 1.33
CLN3-214ENST00000565140 ZC3H12CQ9C0D7 883 aaKnown RBP23.34■■□□□ 1.33
CLN3-214ENST00000565140 PASKQ96RG2 1323 aa23.33■■□□□ 1.33
CLN3-214ENST00000565140 ECE2O60344 883 aa23.33■■□□□ 1.33
CLN3-214ENST00000565140 BCL2L13Q9BXK5 485 aa23.33■■□□□ 1.33
CLN3-214ENST00000565140 GRM8O00222 908 aa23.32■■□□□ 1.32
CLN3-214ENST00000565140 ALDH1L1O75891 902 aa23.32■■□□□ 1.32
CLN3-214ENST00000565140 EPHA10Q5JZY3 1008 aa23.32■■□□□ 1.32
CLN3-214ENST00000565140 MAP1SQ66K74 1059 aaPredicted RBP23.32■■□□□ 1.32
CLN3-214ENST00000565140 SRCIN1Q9C0H9 1055 aa23.32■■□□□ 1.32
CLN3-214ENST00000565140 PSME4Q14997 1843 aa23.31■■□□□ 1.32
CLN3-214ENST00000565140 SHTN1A0MZ66 631 aa23.31■■□□□ 1.32
CLN3-214ENST00000565140 PSMD14O00487 310 aa23.31■■□□□ 1.32
CLN3-214ENST00000565140 CNTROBQ8N137 903 aa23.31■■□□□ 1.32
CLN3-214ENST00000565140 KLRG1Q96E93 195 aa23.31■■□□□ 1.32
CLN3-214ENST00000565140 C9orf78Q9NZ63 289 aaPredicted RBP23.31■■□□□ 1.32
CLN3-214ENST00000565140 ZBTB12Q9Y330 459 aaPredicted RBP23.31■■□□□ 1.32
CLN3-214ENST00000565140 ATP2B4P23634 1241 aa23.3■■□□□ 1.32
CLN3-214ENST00000565140 IGHMBP2P38935 993 aaKnown RBP23.3■■□□□ 1.32
CLN3-214ENST00000565140 USP50Q70EL3 339 aaPredicted RBP23.3■■□□□ 1.32
CLN3-214ENST00000565140 ADARB2Q9NS39 739 aaKnown RBP23.3■■□□□ 1.32
CLN3-214ENST00000565140 CNOT7Q9UIV1 285 aaKnown RBP23.29■■□□□ 1.32
CLN3-214ENST00000565140 A0A1B0GUL6 1792 aa23.29■■□□□ 1.32
CLN3-214ENST00000565140 PTPRCP08575 1304 aa23.29■■□□□ 1.32
CLN3-214ENST00000565140 POLR2AP24928 1970 aaKnown RBP23.29■■□□□ 1.32
CLN3-214ENST00000565140 ANKRD18BA2A2Z9 1011 aa23.28■■□□□ 1.32
CLN3-214ENST00000565140 CCT4P50991 539 aaKnown RBP23.28■■□□□ 1.32
CLN3-214ENST00000565140 ALDH1L2Q3SY69 923 aa23.28■■□□□ 1.32
CLN3-214ENST00000565140 LMBR1LQ6UX01 489 aa23.28■■□□□ 1.32
CLN3-214ENST00000565140 G3V3G9 751 aa23.27■■□□□ 1.32
CLN3-214ENST00000565140 NBPF7P0C2Y1 421 aaPredicted RBP23.27■■□□□ 1.32
CLN3-214ENST00000565140 DCAF8Q5TAQ9 597 aa23.27■■□□□ 1.32
CLN3-214ENST00000565140 MPHOSPH8Q99549 860 aa23.27■■□□□ 1.32
CLN3-214ENST00000565140 CREBZFQ9NS37 354 aa23.27■■□□□ 1.32
CLN3-214ENST00000565140 CHMP3Q9Y3E7 222 aa23.27■■□□□ 1.32
CLN3-214ENST00000565140 HIRAP54198 1017 aaPredicted RBP23.26■■□□□ 1.31
CLN3-214ENST00000565140 DPF2Q92785 391 aa23.26■■□□□ 1.31
CLN3-214ENST00000565140 KAZALD1Q96I82 304 aa23.26■■□□□ 1.31
CLN3-214ENST00000565140 SMC4Q9NTJ3 1288 aa23.26■■□□□ 1.31
CLN3-214ENST00000565140 TRPM7Q96QT4 1865 aa23.26■■□□□ 1.31
CLN3-214ENST00000565140 VIL1P09327 827 aaKnown RBP23.25■■□□□ 1.31
CLN3-214ENST00000565140 FMR1Q06787 632 aaKnown RBP eCLIP23.25■■□□□ 1.31
CLN3-214ENST00000565140 IFIT5Q13325 482 aaKnown RBP23.25■■□□□ 1.31
CLN3-214ENST00000565140 MICALL2Q8IY33 904 aa23.25■■□□□ 1.31
CLN3-214ENST00000565140 TRPM4Q8TD43 1214 aa23.25■■□□□ 1.31
CLN3-214ENST00000565140 SUCLG2Q96I99 432 aa23.25■■□□□ 1.31
CLN3-214ENST00000565140 UTYO14607 1347 aa23.25■■□□□ 1.31
CLN3-214ENST00000565140 TXNRD3Q86VQ6 643 aa23.24■■□□□ 1.31
CLN3-214ENST00000565140 ZNF594Q96JF6 807 aaPredicted RBP23.24■■□□□ 1.31
CLN3-214ENST00000565140 ANKRD2Q9GZV1 360 aa23.24■■□□□ 1.31
CLN3-214ENST00000565140 LEMD3Q9Y2U8 911 aa23.24■■□□□ 1.31
CLN3-214ENST00000565140 MED23Q9ULK4 1368 aa23.24■■□□□ 1.31
CLN3-214ENST00000565140 ZNF646O15015 1829 aaPredicted RBP23.24■■□□□ 1.31
CLN3-214ENST00000565140 H7C1D1 291 aa23.23■■□□□ 1.31
CLN3-214ENST00000565140 CT47B1P0C2W7 299 aaPredicted RBP23.23■■□□□ 1.31
CLN3-214ENST00000565140 CHRNDQ07001 517 aa23.23■■□□□ 1.31
CLN3-214ENST00000565140 JMYQ8N9B5 988 aa23.23■■□□□ 1.31
CLN3-214ENST00000565140 TMEM88BA6NKF7 163 aa23.22■■□□□ 1.31
CLN3-214ENST00000565140 RPS12P25398 132 aaKnown RBP23.22■■□□□ 1.31
CLN3-214ENST00000565140 SAMD7Q7Z3H4 446 aa23.22■■□□□ 1.31
CLN3-214ENST00000565140 HELBQ8NG08 1087 aaPredicted RBP23.22■■□□□ 1.31
CLN3-214ENST00000565140 PGAP2Q9UHJ9 254 aa23.22■■□□□ 1.31
CLN3-214ENST00000565140 ZNF804BA4D1E1 1349 aa23.22■■□□□ 1.31
CLN3-214ENST00000565140 SNAP23O00161 211 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 TRAF5O00463 557 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 TAF5LO75529 589 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 EGFRP00533 1210 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 KLRK1P26718 216 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 CCDC57Q2TAC2 916 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 PODNQ7Z5L7 613 aa23.21■■□□□ 1.31
CLN3-214ENST00000565140 TBC1D10BQ4KMP7 808 aaPredicted RBP23.2■■□□□ 1.3
CLN3-214ENST00000565140 USP44Q9H0E7 712 aa23.2■■□□□ 1.3
CLN3-214ENST00000565140 MKRN1Q9UHC7 482 aaKnown RBP23.2■■□□□ 1.3
CLN3-214ENST00000565140 NOB1Q9ULX3 412 aaKnown RBP23.2■■□□□ 1.3
CLN3-214ENST00000565140 RARSP54136 660 aaKnown RBP23.19■■□□□ 1.3
CLN3-214ENST00000565140 BRPF1P55201 1214 aaPredicted RBP23.19■■□□□ 1.3
CLN3-214ENST00000565140 RSBN1LQ6PCB5 846 aaPredicted RBP23.19■■□□□ 1.3
CLN3-214ENST00000565140 BICC1Q9H694 974 aaKnown RBP23.19■■□□□ 1.3
CLN3-214ENST00000565140 USP17L3A6NCW0 530 aa23.18■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms