RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 CDC5LQ99459 802 aaKnown RBP17.33■□□□□ 0.36
VPS9D1-204ENST00000565023 EYA3Q99504 573 aa17.33■□□□□ 0.36
VPS9D1-204ENST00000565023 BCL2L13Q9BXK5 485 aa17.33■□□□□ 0.36
VPS9D1-204ENST00000565023 YDJCA8MPS7 323 aa17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 G3V3G9 751 aa17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 GMPSP49915 693 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 DCAF8Q5TAQ9 597 aa17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 MAP1SQ66K74 1059 aaPredicted RBP17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 GGA1Q9UJY5 639 aa17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 CHMP3Q9Y3E7 222 aa17.32■□□□□ 0.36
VPS9D1-204ENST00000565023 SLFN5Q08AF3 891 aa17.31■□□□□ 0.36
VPS9D1-204ENST00000565023 FAM161AQ3B820 660 aa17.31■□□□□ 0.36
VPS9D1-204ENST00000565023 BEND3Q5T5X7 828 aa17.31■□□□□ 0.36
VPS9D1-204ENST00000565023 PNMA8AQ86V59 439 aaPredicted RBP17.31■□□□□ 0.36
VPS9D1-204ENST00000565023 ZC3H12CQ9C0D7 883 aaKnown RBP17.31■□□□□ 0.36
VPS9D1-204ENST00000565023 ADAMTSL1Q8N6G6 1762 aa17.3■□□□□ 0.36
VPS9D1-204ENST00000565023 ECE2O60344 883 aa17.3■□□□□ 0.36
VPS9D1-204ENST00000565023 CASP7P55210 303 aa17.3■□□□□ 0.36
VPS9D1-204ENST00000565023 TNIP1Q15025 636 aa17.3■□□□□ 0.36
VPS9D1-204ENST00000565023 ZBTB12Q9Y330 459 aaPredicted RBP17.3■□□□□ 0.36
VPS9D1-204ENST00000565023 ITGA6P23229 1130 aa17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 IGHMBP2P38935 993 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 MRPL50Q8N5N7 158 aaKnown RBP17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 KCNQ5Q9NR82 932 aa17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 C9orf78Q9NZ63 289 aaPredicted RBP17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 GPRC5DQ9NZD1 345 aa17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 SCN9AQ15858 1988 aa17.29■□□□□ 0.36
VPS9D1-204ENST00000565023 XDHP47989 1333 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 SHTN1A0MZ66 631 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 WTIPA6NIX2 430 aaPredicted RBP17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 PSMD14O00487 310 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 CNTROBQ8N137 903 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 SSH1Q8WYL5 1049 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 PLA2G12BQ9BX93 195 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 PODXL2Q9NZ53 605 aa17.28■□□□□ 0.36
VPS9D1-204ENST00000565023 GRM8O00222 908 aa17.27■□□□□ 0.36
VPS9D1-204ENST00000565023 SRCIN1Q9C0H9 1055 aa17.27■□□□□ 0.36
VPS9D1-204ENST00000565023 ADARB2Q9NS39 739 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-204ENST00000565023 MKRN1Q9UHC7 482 aaKnown RBP17.27■□□□□ 0.36
VPS9D1-204ENST00000565023 MINPP1Q9UNW1 487 aa17.27■□□□□ 0.36
VPS9D1-204ENST00000565023 ITGBL1O95965 494 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 ATP2B4P23634 1241 aa17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 FMR1Q06787 632 aaKnown RBP eCLIP17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 USP50Q70EL3 339 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 MPHOSPH8Q99549 860 aa17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 BSDC1Q9NW68 430 aaPredicted RBP17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 CNOT7Q9UIV1 285 aaKnown RBP17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 RTL9Q8NET4 1388 aa17.26■□□□□ 0.35
VPS9D1-204ENST00000565023 ANKRD18BA2A2Z9 1011 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 CSF1RP07333 972 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 FOXO4P98177 505 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 EPHA10Q5JZY3 1008 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 MICALL2Q8IY33 904 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 TRPM4Q8TD43 1214 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 SMC4Q9NTJ3 1288 aa17.25■□□□□ 0.35
VPS9D1-204ENST00000565023 PASKQ96RG2 1323 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 H7C1D1 291 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 ALDH1L1O75891 902 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 CCT4P50991 539 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 RBM26Q5T8P6 1007 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 LMBR1LQ6UX01 489 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 TRMT2AQ8IZ69 625 aaKnown RBP17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 FBXW7Q969H0 707 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 CREBZFQ9NS37 354 aa17.24■□□□□ 0.35
VPS9D1-204ENST00000565023 TRAF5O00463 557 aa17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 HNRNPUQ00839 825 aaKnown RBP eCLIP17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 IFIT5Q13325 482 aaKnown RBP17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 TAF7LQ5H9L4 462 aa17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 SUCLG2Q96I99 432 aa17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 ZNF594Q96JF6 807 aaPredicted RBP17.23■□□□□ 0.35
VPS9D1-204ENST00000565023 TMEM88BA6NKF7 163 aa17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 KCNJ4P48050 445 aa17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 HIRAP54198 1017 aaPredicted RBP17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 TBC1D10BQ4KMP7 808 aaPredicted RBP17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 SAMD7Q7Z3H4 446 aa17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 HELBQ8NG08 1087 aaPredicted RBP17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 TRPM7Q96QT4 1865 aa17.22■□□□□ 0.35
VPS9D1-204ENST00000565023 PTPRCP08575 1304 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 PSME4Q14997 1843 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 POLR2AP24928 1970 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 A0A1B0GUL6 1792 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 SNAP23O00161 211 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 PLIN1O60240 522 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 TAF5LO75529 589 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 NBPF7P0C2Y1 421 aaPredicted RBP17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 HSPA1AP0DMV8 641 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 HSPA1BP0DMV9 641 aaKnown RBP17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 CHRNDQ07001 517 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 CCDC57Q2TAC2 916 aa17.21■□□□□ 0.35
VPS9D1-204ENST00000565023 MED23Q9ULK4 1368 aa17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 KLRK1P26718 216 aa17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 TXNRD3Q86VQ6 643 aa17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 GLIS2Q9BZE0 524 aaPredicted RBP17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 ANKRD2Q9GZV1 360 aa17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 ABT1Q9ULW3 272 aaKnown RBP17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 ZNF804BA4D1E1 1349 aa17.2■□□□□ 0.34
VPS9D1-204ENST00000565023 ALDH1L2Q3SY69 923 aa17.19■□□□□ 0.34
VPS9D1-204ENST00000565023 DPF2Q92785 391 aa17.19■□□□□ 0.34
VPS9D1-204ENST00000565023 ZNF408Q9H9D4 720 aa17.19■□□□□ 0.34
VPS9D1-204ENST00000565023 CNNM1Q9NRU3 951 aa17.19■□□□□ 0.34
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms