RNA–Protein interactions for RNA: ENST00000564678.1

HERPUD1-209, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 1 (best)

Gene HERPUD1, Length 2,199 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-209ENST00000564678 LSG1Q9H089 658 aaKnown RBP8.74□□□□□ -1.01
HERPUD1-209ENST00000564678 A0A087WZG4 1122 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 H7C1W4 665 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 CASP7P55210 303 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 TICAM2Q86XR7 235 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 CCDC191Q8NCU4 936 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 TMX3Q96JJ7 454 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 DIAPH3Q9NSV4 1193 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 ARFGEF2Q9Y6D5 1785 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 TNS2Q63HR2 1409 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 PAPPAQ13219 1627 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 NBPF26B4DH59 902 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 MAP4K4O95819 1239 aaPredicted RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 RFX5P48382 616 aaPredicted RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 PTPN12Q05209 780 aaKnown RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 EPHA10Q5JZY3 1008 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 NBPF14Q5TI25 921 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 NBPF10Q6P3W6 841 aaKnown RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 GIMAP6Q6P9H5 292 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 ZNF662Q6ZS27 426 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 NBPF15Q8N660 670 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 DDX54Q8TDD1 881 aaKnown RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 GIPC2Q8TF65 315 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 STRN4Q9NRL3 753 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 LIMD1Q9UGP4 676 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 PALD1Q9ULE6 856 aa8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 AFDNP55196 1824 aaKnown RBP8.73□□□□□ -1.01
HERPUD1-209ENST00000564678 KCPQ6ZWJ8 1503 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 TMED8Q6PL24 325 aaPredicted RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 CWC27Q6UX04 472 aaKnown RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 UBE3BQ7Z3V4 1068 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 KCNB2Q92953 911 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 IL25Q9H293 177 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 ATG3Q9NT62 314 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 CWC25Q9NXE8 425 aaPredicted RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 FARP1Q9Y4F1 1045 aaPredicted RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 SHANK3Q9BYB0 1731 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 BAG4O95429 457 aaKnown RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 SSFA2P28290 1259 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 LMOD1P29536 600 aaPredicted RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 TRIM28Q13263 835 aaKnown RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 ANKRD13AQ8IZ07 590 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 SPDYE1Q8NFV5 336 aaPredicted RBP8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 DDX12PQ92771 950 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 TM6SF1Q9BZW5 370 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 TMOD3Q9NYL9 352 aa8.72□□□□□ -1.01
HERPUD1-209ENST00000564678 ANKRD62A6NC57 917 aa8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 PALM3A6NDB9 673 aaPredicted RBP8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 ATP5J2-PTCD1G3V325 749 aa8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 PTCD1O75127 700 aaKnown RBP8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 ATP5JP18859 108 aa8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 CCDC8Q9H0W5 538 aaPredicted RBP8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 GPR108Q9NPR9 543 aa8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 SNX14Q9Y5W7 946 aa8.71□□□□□ -1.01
HERPUD1-209ENST00000564678 FSD2A1L4K1 749 aa8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 A1BGP04217 495 aa8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 PIP4K2AP48426 406 aaPredicted RBP8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 FOXO4P98177 505 aa8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 ZGPATQ8N5A5 531 aaKnown RBP8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 C8orf37Q96NL8 207 aa8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 SIL1Q9H173 461 aa8.71□□□□□ -1.02
HERPUD1-209ENST00000564678 GOLGA6L3A6NEY3 463 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 TNNI3KQ59H18 835 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 LMBR1LQ6UX01 489 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 TTLL7Q6ZT98 887 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 MAP4K1Q92918 833 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 TTC14Q96N46 770 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 FAM217BQ9NTX9 383 aaPredicted RBP8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 BTG4Q9NY30 223 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 FPGT-TNNI3KV9GXZ4 949 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 RFX7Q2KHR2 1363 aa8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 COL14A1Q05707 1796 aaKnown RBP8.7□□□□□ -1.02
HERPUD1-209ENST00000564678 STARD3NLO95772 234 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 ZKSCAN1P17029 563 aaPredicted RBP8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 TCIRG1Q13488 830 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 NECTIN1Q15223 517 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 KLHL40Q2TBA0 621 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 KLHDC4Q8TBB5 520 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 ISCA1Q9BUE6 129 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 BOLA2Q9H3K6 86 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 NUP188Q5SRE5 1749 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 IL15P40933 162 aaPredicted RBP8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 C1QBPQ07021 282 aaKnown RBP8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 TFCP2Q12800 502 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 UPF3BQ9BZI7 483 aaKnown RBP8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 CCDC171Q6TFL3 1326 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 DISP2A7MBM2 1401 aa8.69□□□□□ -1.02
HERPUD1-209ENST00000564678 EXOC5O00471 708 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 CIAO1O76071 339 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 PSMA5P28066 241 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 MRE11P49959 708 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 TMEM259Q4ZIN3 620 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 VPS53Q5VIR6 699 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 RNF20Q5VTR2 975 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 PHLDB3Q6NSJ2 640 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 ZNF526Q8TF50 670 aaPredicted RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 PIGBQ92521 554 aa8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 ZSCAN31Q96LW9 406 aaPredicted RBP8.68□□□□□ -1.02
HERPUD1-209ENST00000564678 UCN2Q96RP3 112 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms