RNA–Protein interactions for RNA: ENST00000564574.5

CLN3-212, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,159 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-212ENST00000564574 RIPOR2Q9Y4F9 1068 aa25.55■■□□□ 1.68
CLN3-212ENST00000564574 DCAF8L1A6NGE4 600 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 OS9Q13438 667 aaPredicted RBP25.54■■□□□ 1.68
CLN3-212ENST00000564574 PRPF40BQ6NWY9 871 aaKnown RBP25.54■■□□□ 1.68
CLN3-212ENST00000564574 SP8Q8IXZ3 490 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 NLGN2Q8NFZ4 835 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 SYT17Q9BSW7 474 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 PUS3Q9BZE2 481 aaKnown RBP25.54■■□□□ 1.68
CLN3-212ENST00000564574 EXOC6BQ9Y2D4 811 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 MROH5Q6ZUA9 1318 aa25.54■■□□□ 1.68
CLN3-212ENST00000564574 ARFGEF1Q9Y6D6 1849 aa25.53■■□□□ 1.68
CLN3-212ENST00000564574 LRRC24Q50LG9 513 aa25.53■■□□□ 1.68
CLN3-212ENST00000564574 ATG9AQ7Z3C6 839 aa25.53■■□□□ 1.68
CLN3-212ENST00000564574 TMX4Q9H1E5 349 aaPredicted RBP25.53■■□□□ 1.68
CLN3-212ENST00000564574 ATP6V0A2Q9Y487 856 aa25.53■■□□□ 1.68
CLN3-212ENST00000564574 DALRD3Q5D0E6 543 aaKnown RBP25.52■■□□□ 1.68
CLN3-212ENST00000564574 SMC5Q8IY18 1101 aa25.52■■□□□ 1.68
CLN3-212ENST00000564574 CC2D2BQ6DHV5 1058 aa25.51■■□□□ 1.67
CLN3-212ENST00000564574 ANKRD2Q9GZV1 360 aa25.51■■□□□ 1.67
CLN3-212ENST00000564574 MINPP1Q9UNW1 487 aa25.51■■□□□ 1.67
CLN3-212ENST00000564574 GTF3C3Q9Y5Q9 886 aa25.51■■□□□ 1.67
CLN3-212ENST00000564574 CENPQQ7L2Z9 268 aaPredicted RBP25.5■■□□□ 1.67
CLN3-212ENST00000564574 KDM2BQ8NHM5 1336 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 CHRNDQ07001 517 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 GRIPAP1Q4V328 841 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 METTL24Q5JXM2 366 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 SOGA3Q5TF21 947 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 KIF1BPQ96EK5 621 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 CEP126Q9P2H0 1117 aa25.49■■□□□ 1.67
CLN3-212ENST00000564574 SASH1O94885 1247 aa25.48■■□□□ 1.67
CLN3-212ENST00000564574 B4GALNT3Q6L9W6 998 aa25.48■■□□□ 1.67
CLN3-212ENST00000564574 RHPN1Q8TCX5 695 aa25.48■■□□□ 1.67
CLN3-212ENST00000564574 C7orf43Q8WVR3 580 aa25.48■■□□□ 1.67
CLN3-212ENST00000564574 LTBP1Q14766 1721 aa25.48■■□□□ 1.67
CLN3-212ENST00000564574 LRRCC1Q9C099 1032 aa25.47■■□□□ 1.67
CLN3-212ENST00000564574 XDHP47989 1333 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 PDE8BO95263 885 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 YY1P25490 414 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 VGLL2Q8N8G2 317 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 GPR108Q9NPR9 543 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 PODXL2Q9NZ53 605 aa25.46■■□□□ 1.67
CLN3-212ENST00000564574 TFCP2Q12800 502 aa25.45■■□□□ 1.66
CLN3-212ENST00000564574 ZBTB47Q9UFB7 747 aaPredicted RBP25.45■■□□□ 1.66
CLN3-212ENST00000564574 AKAP2Q9Y2D5 859 aa25.45■■□□□ 1.66
CLN3-212ENST00000564574 ARAP2Q8WZ64 1704 aa25.44■■□□□ 1.66
CLN3-212ENST00000564574 CCDC93Q567U6 631 aa25.44■■□□□ 1.66
CLN3-212ENST00000564574 ANKIB1Q9P2G1 1089 aa25.44■■□□□ 1.66
CLN3-212ENST00000564574 BCS1LQ9Y276 419 aa25.44■■□□□ 1.66
CLN3-212ENST00000564574 LEMD3Q9Y2U8 911 aa25.44■■□□□ 1.66
CLN3-212ENST00000564574 FER1L6Q2WGJ9 1857 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 APBB1O00213 710 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 C21orf2O43822 256 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 ATP2B4P23634 1241 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 GPSM2P81274 684 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 MPNDQ8N594 471 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 SNED1Q8TER0 1413 aa25.43■■□□□ 1.66
CLN3-212ENST00000564574 UBE4AQ14139 1066 aa25.42■■□□□ 1.66
CLN3-212ENST00000564574 PUM3Q15397 648 aaKnown RBP25.42■■□□□ 1.66
CLN3-212ENST00000564574 ANKRD45Q5TZF3 282 aa25.42■■□□□ 1.66
CLN3-212ENST00000564574 RTKN2Q8IZC4 609 aa25.42■■□□□ 1.66
CLN3-212ENST00000564574 CLASRPQ8N2M8 674 aaKnown RBP25.42■■□□□ 1.66
CLN3-212ENST00000564574 HELBQ8NG08 1087 aaPredicted RBP25.42■■□□□ 1.66
CLN3-212ENST00000564574 ZNF219Q9P2Y4 722 aaPredicted RBP25.42■■□□□ 1.66
CLN3-212ENST00000564574 NSFL1CQ9UNZ2 370 aaKnown RBP25.42■■□□□ 1.66
CLN3-212ENST00000564574 ZNF609O15014 1411 aa25.41■■□□□ 1.66
CLN3-212ENST00000564574 TAF5LO75529 589 aa25.41■■□□□ 1.66
CLN3-212ENST00000564574 DPP8Q6V1X1 898 aaPredicted RBP25.41■■□□□ 1.66
CLN3-212ENST00000564574 GGA1Q9UJY5 639 aa25.41■■□□□ 1.66
CLN3-212ENST00000564574 FGFR2P21802 821 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 KCNJ4P48050 445 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 NUCB1Q02818 461 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 ATP2B3Q16720 1220 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 TNNI3KQ59H18 835 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 FPGT-TNNI3KV9GXZ4 949 aa25.4■■□□□ 1.66
CLN3-212ENST00000564574 DUOX1Q9NRD9 1551 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 ZNF804BA4D1E1 1349 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 OLFM4Q6UX06 510 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 SLC51AQ86UW1 340 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 SUPT20HQ8NEM7 779 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 LPIN2Q92539 896 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 IL1RAPL2Q9NP60 686 aa25.39■■□□□ 1.66
CLN3-212ENST00000564574 SMARCA5O60264 1052 aaPredicted RBP25.38■■□□□ 1.65
CLN3-212ENST00000564574 IFIT1P09914 478 aaKnown RBP25.38■■□□□ 1.65
CLN3-212ENST00000564574 SLC5A1P13866 664 aa25.38■■□□□ 1.65
CLN3-212ENST00000564574 CHD1LQ86WJ1 897 aa25.38■■□□□ 1.65
CLN3-212ENST00000564574 TBC1D16Q8TBP0 767 aa25.38■■□□□ 1.65
CLN3-212ENST00000564574 RTFDC1Q9BY42 306 aaPredicted RBP25.38■■□□□ 1.65
CLN3-212ENST00000564574 WWC3Q9ULE0 1092 aa25.38■■□□□ 1.65
CLN3-212ENST00000564574 A0A1B0GUL7 405 aa25.37■■□□□ 1.65
CLN3-212ENST00000564574 UFL1O94874 794 aa25.37■■□□□ 1.65
CLN3-212ENST00000564574 PSMD1Q99460 953 aa25.37■■□□□ 1.65
CLN3-212ENST00000564574 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP25.37■■□□□ 1.65
CLN3-212ENST00000564574 C15orf52Q6ZUT6 534 aaKnown RBP25.36■■□□□ 1.65
CLN3-212ENST00000564574 EAF2Q96CJ1 260 aaPredicted RBP25.36■■□□□ 1.65
CLN3-212ENST00000564574 EYA3Q99504 573 aa25.36■■□□□ 1.65
CLN3-212ENST00000564574 MED23Q9ULK4 1368 aa25.35■■□□□ 1.65
CLN3-212ENST00000564574 AACSQ86V21 672 aa25.35■■□□□ 1.65
CLN3-212ENST00000564574 POLLQ9UGP5 575 aa25.35■■□□□ 1.65
CLN3-212ENST00000564574 C6orf229H3BNL8 230 aa25.34■■□□□ 1.65
CLN3-212ENST00000564574 IFIT2P09913 472 aaKnown RBP25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 16.2 ms