RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 CCDC191Q8NCU4 936 aa21.79■■□□□ 1.08
CLN3-211ENST00000564091 ZC3H12CQ9C0D7 883 aaKnown RBP21.79■■□□□ 1.08
CLN3-211ENST00000564091 ANKRD36CQ5JPF3 1778 aa21.79■■□□□ 1.08
CLN3-211ENST00000564091 UFL1O94874 794 aa21.78■■□□□ 1.08
CLN3-211ENST00000564091 PCCAP05165 728 aaPredicted RBP21.78■■□□□ 1.08
CLN3-211ENST00000564091 TSPYL6Q8N831 410 aa21.78■■□□□ 1.08
CLN3-211ENST00000564091 CWC25Q9NXE8 425 aaPredicted RBP21.78■■□□□ 1.08
CLN3-211ENST00000564091 ANKIB1Q9P2G1 1089 aa21.78■■□□□ 1.08
CLN3-211ENST00000564091 LAMB2P55268 1798 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 PDE8AO60658 829 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 HSP90B1P14625 803 aaKnown RBP21.77■■□□□ 1.08
CLN3-211ENST00000564091 RPS12P25398 132 aaKnown RBP21.77■■□□□ 1.08
CLN3-211ENST00000564091 CCDC152Q4G0S7 254 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 ABHD8Q96I13 439 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 HHIPL1Q96JK4 782 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 METTL22Q9BUU2 404 aaPredicted RBP21.77■■□□□ 1.08
CLN3-211ENST00000564091 PODXL2Q9NZ53 605 aa21.77■■□□□ 1.08
CLN3-211ENST00000564091 CCDC30Q5VVM6 783 aa21.76■■□□□ 1.07
CLN3-211ENST00000564091 KRT26Q7Z3Y9 468 aa21.76■■□□□ 1.07
CLN3-211ENST00000564091 GGA1Q9UJY5 639 aa21.76■■□□□ 1.07
CLN3-211ENST00000564091 TAF1P21675 1872 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 ADM5C9JUS6 153 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 G3V3G9 751 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 DDX58O95786 925 aaKnown RBP21.75■■□□□ 1.07
CLN3-211ENST00000564091 VIL1P09327 827 aaKnown RBP21.75■■□□□ 1.07
CLN3-211ENST00000564091 HUNKP57058 714 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 DCAF8Q5TAQ9 597 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 ZIC5Q96T25 663 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 MAP3K2Q9Y2U5 619 aa21.75■■□□□ 1.07
CLN3-211ENST00000564091 TSR2Q969E8 191 aaKnown RBP21.74■■□□□ 1.07
CLN3-211ENST00000564091 DDX60Q8IY21 1712 aaKnown RBP21.73■■□□□ 1.07
CLN3-211ENST00000564091 KIF4BQ2VIQ3 1234 aa21.73■■□□□ 1.07
CLN3-211ENST00000564091 CCDC184Q52MB2 194 aa21.73■■□□□ 1.07
CLN3-211ENST00000564091 DCPSQ96C86 337 aaKnown RBP21.73■■□□□ 1.07
CLN3-211ENST00000564091 ASTN2O75129 1339 aaPredicted RBP21.73■■□□□ 1.07
CLN3-211ENST00000564091 PI4KAP2A4QPH2 592 aa21.72■■□□□ 1.07
CLN3-211ENST00000564091 IGKV5-2P06315 115 aa21.72■■□□□ 1.07
CLN3-211ENST00000564091 BRPF1P55201 1214 aaPredicted RBP21.72■■□□□ 1.07
CLN3-211ENST00000564091 ANKRD18AQ8IVF6 992 aa21.72■■□□□ 1.07
CLN3-211ENST00000564091 PI4KAP1Q8N8J0 262 aa21.72■■□□□ 1.07
CLN3-211ENST00000564091 LRRC37AA6NMS7 1700 aa21.72■■□□□ 1.07
CLN3-211ENST00000564091 KSR2Q6VAB6 950 aa21.71■■□□□ 1.07
CLN3-211ENST00000564091 CHMP4AQ9BY43 222 aa21.71■■□□□ 1.07
CLN3-211ENST00000564091 GBA2Q9HCG7 927 aaPredicted RBP21.71■■□□□ 1.07
CLN3-211ENST00000564091 WTIPA6NIX2 430 aaPredicted RBP21.7■■□□□ 1.06
CLN3-211ENST00000564091 CA12O43570 354 aa21.7■■□□□ 1.06
CLN3-211ENST00000564091 NOGQ13253 232 aa21.7■■□□□ 1.06
CLN3-211ENST00000564091 RSBN1LQ6PCB5 846 aaPredicted RBP21.7■■□□□ 1.06
CLN3-211ENST00000564091 GGA3Q9NZ52 723 aa21.7■■□□□ 1.06
CLN3-211ENST00000564091 CTSWP56202 376 aa21.69■■□□□ 1.06
CLN3-211ENST00000564091 C2orf69Q8N8R5 385 aa21.69■■□□□ 1.06
CLN3-211ENST00000564091 XDHP47989 1333 aa21.69■■□□□ 1.06
CLN3-211ENST00000564091 THSD7BQ9C0I4 1608 aa21.69■■□□□ 1.06
CLN3-211ENST00000564091 ATP2B4P23634 1241 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 CWF19L2Q2TBE0 894 aaKnown RBP21.68■■□□□ 1.06
CLN3-211ENST00000564091 RGMBQ6NW40 437 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 G2E3Q7L622 706 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 SULF1Q8IWU6 871 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 TTLL11Q8NHH1 800 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 CDC5LQ99459 802 aaKnown RBP21.68■■□□□ 1.06
CLN3-211ENST00000564091 STK31Q9BXU1 1019 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 GREM2Q9H772 168 aa21.68■■□□□ 1.06
CLN3-211ENST00000564091 CCDC85CA6NKD9 419 aa21.67■■□□□ 1.06
CLN3-211ENST00000564091 FAM155AB1AL88 458 aaPredicted RBP21.67■■□□□ 1.06
CLN3-211ENST00000564091 ZNF280AP59817 542 aaPredicted RBP21.67■■□□□ 1.06
CLN3-211ENST00000564091 SCARF1Q14162 830 aa21.67■■□□□ 1.06
CLN3-211ENST00000564091 AGBL3Q8NEM8 1001 aa21.67■■□□□ 1.06
CLN3-211ENST00000564091 SLC4A2P04920 1241 aa21.66■■□□□ 1.06
CLN3-211ENST00000564091 NEXNQ0ZGT2 675 aa21.66■■□□□ 1.06
CLN3-211ENST00000564091 WWC1Q8IX03 1113 aa21.66■■□□□ 1.06
CLN3-211ENST00000564091 MINPP1Q9UNW1 487 aa21.66■■□□□ 1.06
CLN3-211ENST00000564091 TRPM7Q96QT4 1865 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 USP17L3A6NCW0 530 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 USP17L4A6NCW7 530 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 NEURL1BA8MQ27 555 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 ZNF157P51786 506 aaPredicted RBP21.65■■□□□ 1.06
CLN3-211ENST00000564091 TWISTNBQ3B726 338 aaPredicted RBP21.65■■□□□ 1.06
CLN3-211ENST00000564091 ANGEL2Q5VTE6 544 aaKnown RBP21.65■■□□□ 1.06
CLN3-211ENST00000564091 USP17L1Q7RTZ2 530 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 PODNQ7Z5L7 613 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 CDCA5Q96FF9 252 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 GMLQ99445 158 aa21.65■■□□□ 1.06
CLN3-211ENST00000564091 BSDC1Q9NW68 430 aaPredicted RBP21.65■■□□□ 1.06
CLN3-211ENST00000564091 USP17L8P0C7I0 530 aa21.64■■□□□ 1.05
CLN3-211ENST00000564091 KIF23Q02241 960 aaPredicted RBP21.64■■□□□ 1.05
CLN3-211ENST00000564091 CCDC27Q2M243 656 aa21.64■■□□□ 1.05
CLN3-211ENST00000564091 CCDC102AQ96A19 550 aa21.64■■□□□ 1.05
CLN3-211ENST00000564091 MYOZ2Q9NPC6 264 aa21.64■■□□□ 1.05
CLN3-211ENST00000564091 H7C1W4 665 aa21.63■■□□□ 1.05
CLN3-211ENST00000564091 UBE3BQ7Z3V4 1068 aa21.63■■□□□ 1.05
CLN3-211ENST00000564091 MXD3Q9BW11 206 aa21.63■■□□□ 1.05
CLN3-211ENST00000564091 MCOLN1Q9GZU1 580 aa21.63■■□□□ 1.05
CLN3-211ENST00000564091 SCAF8Q9UPN6 1271 aaKnown RBP21.63■■□□□ 1.05
CLN3-211ENST00000564091 CCT4P50991 539 aaKnown RBP21.61■■□□□ 1.05
CLN3-211ENST00000564091 FAM161AQ3B820 660 aa21.6■■□□□ 1.05
CLN3-211ENST00000564091 FBXW7Q969H0 707 aa21.6■■□□□ 1.05
CLN3-211ENST00000564091 MED23Q9ULK4 1368 aa21.6■■□□□ 1.05
CLN3-211ENST00000564091 ZNF609O15014 1411 aa21.59■■□□□ 1.05
CLN3-211ENST00000564091 SLC10A3P09131 477 aa21.59■■□□□ 1.05
CLN3-211ENST00000564091 IGHMBP2P38935 993 aaKnown RBP21.59■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 61.7 ms