RNA–Protein interactions for RNA: ENST00000563884.1

VPS35-204, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 759 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-204ENST00000563884 MKRN1Q9UHC7 482 aaKnown RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 HCN4Q9Y3Q4 1203 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 RBM19Q9Y4C8 960 aaKnown RBP8.53□□□□□ -1.04
VPS35-204ENST00000563884 CLIP1P30622 1438 aa8.53□□□□□ -1.04
VPS35-204ENST00000563884 PRXQ9BXM0 1461 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 SUPT5HO00267 1087 aaKnown RBP8.52□□□□□ -1.05
VPS35-204ENST00000563884 RXRBP28702 533 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 SFSWAPQ12872 951 aaKnown RBP8.52□□□□□ -1.05
VPS35-204ENST00000563884 CD163Q86VB7 1156 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 PLVAPQ9BX97 442 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 ATP7AQ04656 1500 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 SETBP1Q9Y6X0 1596 aa8.52□□□□□ -1.05
VPS35-204ENST00000563884 TNRQ92752 1358 aa8.51□□□□□ -1.05
VPS35-204ENST00000563884 PALM3A6NDB9 673 aaPredicted RBP8.51□□□□□ -1.05
VPS35-204ENST00000563884 THEMISQ8N1K5 641 aaPredicted RBP8.51□□□□□ -1.05
VPS35-204ENST00000563884 LARGE2Q8N3Y3 721 aa8.51□□□□□ -1.05
VPS35-204ENST00000563884 GLMNQ92990 594 aa8.51□□□□□ -1.05
VPS35-204ENST00000563884 SAMD9LQ8IVG5 1584 aa8.51□□□□□ -1.05
VPS35-204ENST00000563884 SPATA31A6Q5VVP1 1343 aa8.51□□□□□ -1.05
VPS35-204ENST00000563884 COL16A1Q07092 1604 aaPredicted RBP8.51□□□□□ -1.05
VPS35-204ENST00000563884 SIN3BO75182 1162 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 CHRNA4P43681 627 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 C7orf43Q8WVR3 580 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 TRIM11Q96F44 468 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 ZNF594Q96JF6 807 aaPredicted RBP8.5□□□□□ -1.05
VPS35-204ENST00000563884 CEP63Q96MT8 703 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 PHACTR1Q9C0D0 580 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 ANKIB1Q9P2G1 1089 aa8.5□□□□□ -1.05
VPS35-204ENST00000563884 INO80Q9ULG1 1556 aaPredicted RBP8.5□□□□□ -1.05
VPS35-204ENST00000563884 CDK11AQ9UQ88 783 aaPredicted RBP8.5□□□□□ -1.05
VPS35-204ENST00000563884 ATAD2Q6PL18 1390 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 CDC42BPAQ5VT25 1732 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 FGD6Q6ZV73 1430 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 SFI1A8K8P3 1242 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 PPP1R12BO60237 982 aaPredicted RBP8.49□□□□□ -1.05
VPS35-204ENST00000563884 NEUROD1Q13562 356 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 C1orf53Q5VUE5 145 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 TSEN2Q8NCE0 465 aaKnown RBP8.49□□□□□ -1.05
VPS35-204ENST00000563884 HSH2DQ96JZ2 352 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 SLC30A3Q99726 388 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 BRD7Q9NPI1 651 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 GTF3C3Q9Y5Q9 886 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 PZPP20742 1482 aa8.49□□□□□ -1.05
VPS35-204ENST00000563884 M0R2N6 131 aa8.48□□□□□ -1.05
VPS35-204ENST00000563884 SPEM2Q0P670 501 aa8.48□□□□□ -1.05
VPS35-204ENST00000563884 A2MP01023 1474 aa8.48□□□□□ -1.05
VPS35-204ENST00000563884 SPDYE3A6NKU9 549 aa8.47□□□□□ -1.05
VPS35-204ENST00000563884 RAB44Q7Z6P3 723 aaPredicted RBP8.47□□□□□ -1.05
VPS35-204ENST00000563884 SIX5Q8N196 739 aa8.47□□□□□ -1.05
VPS35-204ENST00000563884 LRP6O75581 1613 aa8.47□□□□□ -1.05
VPS35-204ENST00000563884 ABCC3O15438 1527 aa8.46□□□□□ -1.05
VPS35-204ENST00000563884 ADARB2-AS1A8MUL3 147 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 M0R082 166 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 SPATA31C1P0DKV0 1188 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 RASA1P20936 1047 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 HIRAP54198 1017 aaPredicted RBP8.46□□□□□ -1.06
VPS35-204ENST00000563884 PRRT3Q5FWE3 981 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 ZNF417Q8TAU3 575 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 SUSD3Q96L08 255 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 ZNF587Q96SQ5 575 aaPredicted RBP8.46□□□□□ -1.06
VPS35-204ENST00000563884 KCNH4Q9UQ05 1017 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 TIAM1Q13009 1591 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 UBR1Q8IWV7 1749 aa8.46□□□□□ -1.06
VPS35-204ENST00000563884 TROQ12816 1431 aaPredicted RBP8.46□□□□□ -1.06
VPS35-204ENST00000563884 NWD1Q149M9 1564 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 NHSL1Q5SYE7 1610 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 ZNF280CQ8ND82 737 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 TNFRSF25Q93038 417 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 CALR3Q96L12 384 aaKnown RBP8.45□□□□□ -1.06
VPS35-204ENST00000563884 MDFIQ99750 246 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 ZMYND15Q9H091 742 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 TFIP11Q9UBB9 837 aaKnown RBP8.45□□□□□ -1.06
VPS35-204ENST00000563884 RGS12O14924 1447 aa8.45□□□□□ -1.06
VPS35-204ENST00000563884 ADH7P40394 386 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 GATA4P43694 442 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 DOC2BQ14184 412 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 ALDH16A1Q8IZ83 802 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 SCG3Q8WXD2 468 aaKnown RBP8.44□□□□□ -1.06
VPS35-204ENST00000563884 NGLY1Q96IV0 654 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 PPP1R12CQ9BZL4 782 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 MAFBQ9Y5Q3 323 aaPredicted RBP8.44□□□□□ -1.06
VPS35-204ENST00000563884 SCAF11Q99590 1463 aaKnown RBP8.44□□□□□ -1.06
VPS35-204ENST00000563884 SYCP2Q9BX26 1530 aa8.44□□□□□ -1.06
VPS35-204ENST00000563884 C21orf2O43822 256 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 APBA3O96018 575 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 SEC13P55735 322 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 TYRO3Q06418 890 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 GGT6Q6P531 493 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 BHMTQ93088 406 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 SPAG9O60271 1321 aaKnown RBP8.43□□□□□ -1.06
VPS35-204ENST00000563884 MAP3K1Q13233 1512 aa8.43□□□□□ -1.06
VPS35-204ENST00000563884 AHDC1Q5TGY3 1603 aaPredicted RBP8.43□□□□□ -1.06
VPS35-204ENST00000563884 KDM5AP29375 1690 aaKnown RBP8.43□□□□□ -1.06
VPS35-204ENST00000563884 DKK1O94907 266 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 ALBP02768 609 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 KCNQ4P56696 695 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 TBC1D8BQ0IIM8 1120 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 HIF1AQ16665 826 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 XP32Q5T750 250 aa8.42□□□□□ -1.06
VPS35-204ENST00000563884 LARP1Q6PKG0 1096 aaKnown RBP8.42□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms